Job Description A0AVF1 Confidence 99.93% Date Sat Jun 16 10:27:57 BST 2012 Rank 22 Aligned Residues 219 % Identity 15% Template c4abnA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:tetratricopeptide repeat protein 5; PDBTitle: crystal structure of full length mouse strap (ttc5) Resolution 2.05 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		F	T	G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	.	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	G	M	Y	K	Q	A	E	A	A	G	F	K	A
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		M	E	K	T	L	Q	Q	M	E	E	V	L	G	S	A	Q	V	E	A	Q	A	L	M	L	K	G	K	A	L	N	V	T	P	D	Y	S	P	E	A	E	V	L	L	S	K	A	V	K	L	E	P	E	L	V	E	A	W	N	Q	L	G	E	V	Y	W	K	K	G	D	V	T	S	A	H	T	C	F	S	G	A
Template Known Secondary structure														T	T																T	S	S	S	S																	T	T																T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E	Y	L	A	L	N	V	Y	V	A	L	C	Y	Y	.
Query Conservation																																																																																	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	H	C	K	N	K	V	S	L	Q	N	L	S	M	V	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	Q	T	D	S	G	D	E	H	S	R	H	V	M	D	S	V	R	Q	A	K	L	A	V	Q	M	D	V	L	D	G	R	S	W	Y	I	L	G	N	A	Y	L	S
Template Known Secondary structure			T	T															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				S																								T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
									197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																					.	.	.
Query SS confidence		.	.	.	.	.	.	.																					.	.	.
Query Sequence		.	.	.	.	.	.	.	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I	P	.	.	.	D	S	T	I	A	L	N	L	K	A	C	N	H	F	R	L	Y	N	G	R	A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	E	F	A	K	E	L	I	R	H	N	L	V	V
Query Conservation		.	.	.	.	.	.	.																					.	.	.
Alig confidence		.	.	.	.	.	.	.																					.	.	.																																																.
Template Conservation																																																																															.
Template Sequence		L	Y	F	N	T	G	Q	N	P	K	I	S	Q	Q	A	L	S	A	Y	A	Q	A	E	K	V	D	R	K	A	S	S	N	P	D	L	H	L	N	R	A	T	L	H	K	Y	E	E	S	Y	G	E	A	L	E	G	F	S	Q	A	A	A	L	D	P	A	W	P	E	P	Q	Q	R	E	Q	Q	L	L	.	E	F
Template Known Secondary structure						T	T																					G	G	G	G	G															T	T																	T	T													.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270
		267	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	G	G	E	G	A	L	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	R	L	T	S	L	L	E	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions