Job Description A0AVF1 Confidence 99.85% Date Sat Jun 16 10:27:57 BST 2012 Rank 39 Aligned Residues 448 % Identity 10% Template c3v6tA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dhax3; PDBTitle: crystal structure of the dna-bound dhax3, a tal effector, at 1.852 angstrom Resolution 1.85 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S
Query Conservation
Alig confidence																																																									.	.
Template Conservation																																																									.	.
Template Sequence		E	A	L	L	T	V	A	G	E	L	R	G	P	P	L	Q	L	D	T	G	Q	L	L	K	I	A	K	R	G	G	V	T	A	V	E	A	V	H	A	W	R	N	A	L	T	G	A	P	L	N	L	T	P	E	Q	.	.	V	V	A	I	A	S	H	D	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V
Template Known Secondary structure												T	S	T	T	T				S										T											T						S	T	T	T							.	.						S	S	T	T
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
							121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																													.	.	.	.	.	.	.												.	.	.
Query SS confidence		.	.	.	.	.																													.	.	.	.	.	.	.												.	.	.
Query Sequence		.	.	.	.	.	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	.	.	.	.	.	.	.	D	V	T	E	D	Q	L	S	L	A	S	.	.	.	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E	Y	L
Query Conservation		.	.	.	.	.																													.	.	.	.	.	.	.												.	.	.
Alig confidence		.	.	.	.	.																													.	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		L	C	Q	A	H	G	L	T	P	Q	Q	V	V	A	I	A	S	H	D	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T	P	E	Q	V	V	A	I	A	S	H	D	G	G	K	Q	A	L	E	T	V	Q	A	L	L	P	V	L	C	Q	A	H	G	L	T	P	E	Q	V
Template Known Secondary structure						S												S	S	T	T																		T	S												S	S	T	T																		T	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		A	L	N	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I	P	D	S	T	I	A	L	N	L	K	A	C	N	H	F	R	L	Y	N	G	R	A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	E	F	A	K	E	L	.	.	I	R	H	N
Query Conservation																																																																												.	.
Alig confidence																																																																												.	.
Template Conservation
Template Sequence		V	A	I	A	S	N	G	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T	P	Q	Q	V	V	A	I	A	S	N	G	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T	P	Q	Q	V	V	A	I	A	S	N	G	G	G	K	Q	A
Template Known Secondary structure						S	S	T	T																															S	S	T	T																T	T	T	S													S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	F	R	G	G	E	G	A	L	Q	V	L	P	P	L	V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y	L	R	Q	D	D	V	Q	E	A	Y	N	L	I	K	D	L	E	P	T	T	P	Q	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S	R	D	H	M	K	I	A	Q
Query Conservation
Alig confidence																																																									.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T	P	Q	Q	V	V	A	I	A	S	N	S	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T	P	Q	Q	.	.	.	.	V	V	A	I	A	S	N	G	G	G	K	Q	A	L	E	T	V	Q	R	L	L
Template Known Secondary structure																												S	S	T	T																	T	T	T		S					.	.	.	.						T	S	T	T
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.					.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	F	Q	L	V	G	G	S	A	S	E	C	D	T	I	P	G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	F	Y	N	D	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A	F	L	L	I	Q	S	E	K
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		P	V	L	C	Q	A	H	G	L	.	.	T	P	Q	Q	V	V	A	I	A	S	H	D	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T	P	E	Q	V	V	A	I	A	S	N	G	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T
Template Known Secondary structure							T	S			.	.										S	S	T	T																		T	T												S	S	T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.			.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		M	K	N	D	Y	I	Y	L	S	W	L	A	R	C	Y	I	M	N	K	K	P	R	L	A	W	E	L	Y	L	K	M	.	E	T	S	G	E	S	F	S	L	L	Q	L	I	A	N	D	C	Y	K	M	G	Q	F	Y	Y	S	A	K	A	F	D	V	L	E	R	L	D	P	N	P	E	Y	W
Query Conservation																																	.
Alig confidence			.																														.
Template Conservation			.
Template Sequence		P	.	E	Q	V	V	A	I	A	S	H	D	G	G	K	Q	A	L	E	T	V	Q	R	L	L	P	V	L	C	Q	A	H	G	L	T	P	Q	Q	V	V	A	I	A	S	N	G	G	G	R	P	A	L	E	S	I	V	A	Q	L	S	R	P	D	P	A	L	A	A	L	T	N	D	H	L	V
Template Known Secondary structure			.								S	S	T	T																		T	T												S	S	T	T														S							T	S
Template Predicted Secondary structure			.
Template SS confidence
		631		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.