Job Description A0AVF1 Confidence 99.64% Date Sat Jun 16 10:27:57 BST 2012 Rank 65 Aligned Residues 241 % Identity 10% Template c3u64A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:protein tp_0956; PDBTitle: the crystal structure of tat-t (tp0956) Resolution 2.30 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.								.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																														.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																														.	.	.	.	.	.
Query Sequence		L	E	E	L	L	S	K	R	D	F	T	G	A	.	.	.	.	.	.	.	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	.	.	.	.	.	.	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N
Query Conservation															.	.	.	.	.	.	.																														.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																														.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	V	F	T	E	E	D	D	L	D	L	V	A	Q	S	L	P	L	V	L	K	V	Y	E	A	L	H	L	Q	N	P	A	H	R	G	L	S	L	A	V	G	R	L	Y	I	M	Y	A	N	A	F	V	Q	T	P	A	Q	Y	L	P	E	D	E	F	E	A	Q	N	E	A	Y	S	R	A	R	K	L	Y	L
Template Known Secondary structure		S					T																										T	T																				T						T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		L	A	C	T	Y	F	F	L	G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	.	.	.	.	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D
Query Conservation																																												.	.	.	.
Alig confidence																																												.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		R	G	A	R	Y	A	L	S	S	L	E	T	A	Y	P	G	F	T	R	E	V	F	S	G	D	E	Q	R	L	H	K	V	L	S	R	C	T	R	V	D	V	G	T	L	Y	W	V	G	T	G	Y	V	A	A	F	A	L	T	P	L	G	S	A	L	P	.	.	.	.	.	.	.	D	T	V	H	A	A	V	M
Template Known Secondary structure															S	T	T						T	S	S										T	T			G	G	G																T	T	S		T	T	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																.	.													.	.	.	.	.																				.															.
Query SS confidence																.	.													.	.	.	.	.																				.															.
Query Sequence		I	Y	K	R	I	L	L	D	N	R	E	Y	L	A	.	.	L	N	V	Y	V	A	L	C	Y	Y	K	L	.	.	.	.	.	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I	P	D	.	S	T	I	A	L	N	L	K	A	C	N	H	F	R	.	L	Y	N	G	R	A	A	E	A	E	L	K
Query Conservation																.	.													.	.	.	.	.																				.															.
Alig confidence																.	.													.	.	.	.	.																				.															.
Template Conservation
Template Sequence		M	L	E	R	A	C	D	L	W	P	S	Y	Q	E	G	A	V	W	N	V	L	T	K	F	Y	A	A	A	P	E	S	F	G	G	G	M	E	K	A	H	T	A	F	E	H	L	T	R	Y	C	S	A	H	D	P	D	H	H	I	T	Y	A	D	A	L	C	I	P	L	N	N	R	A	G	F	D	E	A	L	D
Template Known Secondary structure											T	T																	S		T	T	T	T																			T	T		S										T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	M	D	N	A	S	S	S	F	E	F	A	K	E	L	I	R	H	N	L	V	V	F	R	G	G	E	G	A	L	Q	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	L	A	I	D	P	E	S	V	P	H	N	K	L	L	V	I	L	S	Q	K	R	A	R	W	L	K	A	H	V	Q	D	F
Template Known Secondary structure								G	G	G		S	S																		T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions