Job Description A0AVF1 Confidence 98.36% Date Sat Jun 16 10:27:57 BST 2012 Rank 119 Aligned Residues 236 % Identity 9% Template c3txmA_ PDB info PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex Resolution 3.00 Å

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		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.					360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		T	P	Q	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S	R	D	H	M	K	I	A	Q	Q	F	F	Q	L	V	G	G	S	A	S	E	C	D	T	I	.	.	.	.	P	G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	F	Y
Query Conservation																																															.	.	.	.
Alig confidence																																															.	.	.	.
Template Conservation
Template Sequence		D	E	E	R	I	R	I	K	E	Q	G	I	L	Q	Q	G	E	L	Y	K	Q	E	G	K	A	K	E	L	A	D	L	I	K	V	T	R	P	F	L	S	S	I	S	K	A	K	A	A	K	L	V	R	S	L	V	D	M	F	L	D	M	D	A	G	T	G	I	E	V	Q	L	C	K	D	C	I	E	W	A	K
Template Known Secondary structure						T																	T	T																	T	T	S																		T	S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		391	.							.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.						.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.																																					.	.	.	.	.
Query SS confidence				.	.	.	.	.	.																																					.	.	.	.	.
Query Sequence		N	D	.	.	.	.	.	.	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A	F	L	L	I	Q	S	E	K	M	K	N	D	Y	.	.	.	.	.	I	Y	L	S	W	L	A	R	C	Y	I	M	N	K	K	P	R	L	A	W	E	L	Y	L	K	M	E	T	S	G	E
Query Conservation				.	.	.	.	.	.																																					.	.	.	.	.
Alig confidence				.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation
Template Sequence		Q	E	K	R	T	F	L	R	Q	S	L	E	A	R	L	I	A	L	Y	F	D	T	A	L	Y	T	E	A	L	A	L	G	A	Q	L	L	R	E	L	K	K	L	D	D	K	N	L	L	V	E	V	Q	L	L	E	S	K	T	Y	H	A	L	S	N	L	P	K	A	R	A	A	L	T	S	A	R	T	T	A	N
Template Known Secondary structure		T	T	T																				T																		T	S	S		T																	T	T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		460									.	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure			.	.	.	.	.	.	.	.														.
Query SS confidence			.	.	.	.	.	.	.	.														.
Query Sequence		S	.	.	.	.	.	.	.	.	F	S	L	L	Q	L	I	A	N	D	C	Y	K	.	M	G	Q	F	Y	Y	S	A	K	A	F	D	V	L	E	R	L	D	P	N	P	E	Y	W	E	G	K	R	G	A	C	V	G	I	F	Q	M	I	I	A	G	R	E	P	K	E	T	L	R	E	V	L	H	L	L	R	S
Query Conservation			.	.	.	.	.	.	.	.														.
Alig confidence			.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		A	I	Y	C	P	P	K	V	Q	G	A	L	D	L	Q	S	G	I	L	H	A	A	D	E	R	D	F	K	T	A	F	S	Y	F	Y	E	A	F	E	G	F	D	S	V	D	S	V	K	A	L	T	S	L	K	Y	M	L	L	C	K	I	M	L	G	Q	S	D	D	V	N	Q	L	V	S	G	K	L	A	I	T
Template Known Secondary structure			S																					T	T																		T	T	T																			T	T		T	T								S					T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	N	T	Q	V	E	Y	M	I	R	I	M	K	K	W	A	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	G	R	D	I	D	A	M	K	S	V	A	E	A	S	H	K	R	S
Template Known Secondary structure		T		S																T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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