Job Description A0AVF1 Confidence 29.72% Date Sat Jun 16 10:27:57 BST 2012 Rank 154 Aligned Residues 79 % Identity 11% Template c3t5vE_ PDB info PDB header:transcription Chain: E: PDB Molecule:nuclear mrna export protein thp1; PDBTitle: sac3:thp1:sem1 complex Resolution 2.90 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.									.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.			.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.			.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	E	E	L	L	S	K	R	D	F	T	G	A	I	T	L	L	E	F	K	R	H	V	G	.	.	E	E	.	.	.	.	.	.	.	.	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.			.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.			.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	N	I	Y	F	R	I	E	S	P	Q	L	C	S	N	I	F	K	N	F	Q	P	K	S	M	L	A	H	F	N	E	Y	Q	L	D	Q	Q	I	E	Y	R	Y	L	L	G	R	Y	Y	L	L	N	S	Q	V	H	N	A	F	V	Q	F	N	E	A	F	Q	S	L	L	N	L	P	L	T	N	Q	A	I	T
Template Known Secondary structure									S	S			T	T														S	S		G	G	G	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
			89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	G	M	Y
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		R	N	G	T	R	I	L	N	Y	M	I	P	T	G	L	I	L	G	K	M
Template Known Secondary structure																		T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions