Job Description A0AVF1 Confidence 95.51% Date Sat Jun 16 10:27:57 BST 2012 Rank 134 Aligned Residues 208 % Identity 9% Template c3spaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase, mitochondrial; PDBTitle: crystal structure of human mitochondrial rna polymerase Resolution 2.50 Å

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		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y	L	R	Q	D	D	V	Q	E	A	Y	N	L	I	K	D	L	E	P	T	T	P	Q	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S	R	D	H	M	K	I	A	Q	Q	F	F	Q	L	V	G	G	S	A	S	E	C	D	T	I	P
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		L	S	G	Q	Q	Q	R	L	L	A	F	F	K	C	C	L	L	T	D	Q	L	P	L	A	H	H	L	L	V	V	H	H	G	Q	R	Q	K	R	K	L	L	T	L	D	M	Y	N	A	V	M	L	G	W	A	R	Q	G	A	F	K	E	L	V	Y	V	L	F	M	V	K	D	A	G	L	T	P	.	D	L	L
Template Known Secondary structure																				T															S					T	T																	T															T	T				.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.																										.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	F	Y	N	D	D	I	F	N	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Y	A	A	A	L	Q	C	M	G	R	Q	D	Q	D	A	G	T	I	E	R	C	L	E	Q	M	S	Q	E	G	L	K	L	Q	A	L	F	T	A	V	L	L	S	E	E	D	R	A	T	V	L	K	A	V	H	K	V	K	P	T	F	S	L	P	P	Q	L	P	P	P	V	N	T	S	K	L	L	R	D	V
Template Known Secondary structure														T																	T			S							S															G	G	G																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.					.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.			.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.																	.	.
Query SS confidence																																													.	.	.	.																	.	.
Query Sequence		F	L	L	I	Q	S	E	K	M	K	N	D	Y	I	Y	L	S	W	L	A	R	C	Y	I	M	N	K	K	P	R	L	A	W	E	L	Y	L	K	M	E	T	S	G	.	.	.	.	E	S	F	S	L	L	Q	L	I	A	N	D	C	Y	K	M	.	.	G	Q	F	Y	Y	S	A	K	A	F	D	V	L	E	R
Query Conservation																																													.	.	.	.																	.	.
Alig confidence																																													.	.	.	.																	.	.
Template Conservation
Template Sequence		Y	A	K	D	G	R	V	S	Y	P	K	L	H	L	P	L	K	T	L	Q	C	L	F	E	K	Q	L	H	M	E	L	A	S	R	V	C	V	V	S	V	E	K	P	T	L	P	S	K	E	V	K	H	A	R	K	T	L	K	T	L	R	D	Q	W	E	K	A	L	C	R	A	L	R	E	T	K	N	R	L	E
Template Known Secondary structure						S								S	S																											S							T	T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions