Job Description A0AVF1 Confidence 99.87% Date Sat Jun 16 10:27:57 BST 2012 Rank 36 Aligned Residues 305 % Identity 14% Template c3ro2A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:g-protein-signaling modulator 2; PDBTitle: structures of the lgn/numa complex Resolution 2.30 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	.	.	.	.	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.																																									.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		L	A	L	E	G	E	R	L	C	K	S	G	D	C	R	A	G	V	S	F	F	E	A	A	V	Q	V	G	T	E	D	L	K	T	L	S	A	I	Y	S	Q	L	G	N	A	Y	F	Y	L	H	D	Y	A	K	A	L	E	Y	H	H	H	D	L	T	L	A	R	T	I	G	D	Q	L	G	E	.	.	.	.	.
Template Known Secondary structure												T	T																		S																			T	T																				T						.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E	Y	L	A	L	N	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	A	S	G	N	L	G	N	T	L	K	V	L	G	N	F	D	E	A	I	V	C	C	Q	R	H	L	D	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	S	T	I	A	L	N	L	K	A	C	N	H	F	R	L	Y	N	G	R	A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	E	F	A	K	E	L	I	R	H	N	L	V	V	F	R	G	G	E	G	A	L	Q	V	L	P	P	L	V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	R	E	L	N	D	K	V	G	E	A	R	A	L	Y	N	L	G	N	V	Y	H	A	K	G	K	S	F	G	C	P	G	P	Q	F	P	E	D	V	R	N	A	L	Q	A	A	V	D	L	Y	E	E	N	L	S	L	V	T	A	L	G	D	R	A	A	Q	G	R	A	F	G	N	L	G	N	T	H
Template Known Secondary structure		.	.	.	.			T	T																						T	S	S	S	S	S																													T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350					.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																																		.	.	.	.
Query SS confidence																								.	.																																		.	.	.	.
Query Sequence		L	R	Q	D	D	V	Q	E	A	Y	N	L	I	K	D	L	E	P	T	T	P	Q	.	.	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S	R	D	H	M	K	I	A	Q	Q	F	F	Q	L	V	G	.	.	.	.	G	S	A	S	E	C	D	T	I	P	G	R	Q	C	M	A	S	C	F
Query Conservation																								.	.																																		.	.	.	.
Alig confidence																								.	.																																		.	.	.	.
Template Conservation
Template Sequence		Y	L	L	G	N	F	R	D	A	V	I	A	H	E	Q	R	L	L	I	A	K	E	F	G	D	K	A	A	E	R	R	A	Y	S	N	L	G	N	A	Y	I	F	L	G	E	F	E	T	A	S	E	Y	Y	K	K	T	L	L	L	A	R	Q	L	K	D	R	A	V	E	A	Q	S	C	Y	S	L	G	N	T	Y
Template Known Secondary structure					T																				T																				T																			T	T
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.							.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	.	.	.	.	.	.	F	Y	N	D	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A	F	L	L	I	Q	S	E
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	L	Q	D	Y	E	K	A	I	D	Y	H	L	K	H	L	A	I	A	Q	E	L	K	D	R	I	G	E	G	R	A	C	W	S	L	G	N	A	Y	T	A	L	G	N	H	D	Q	A	M	H	F	A	E	K	H	L	E	I
Template Known Secondary structure				T	T																				T																				T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions