Job Description A0AVF1 Confidence 99.88% Date Sat Jun 16 10:27:57 BST 2012 Rank 33 Aligned Residues 269 % Identity 9% Template c3mv3B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 3.25 Å

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		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	N	H	F	R	L	Y	N	G	R	A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	E	F	A	K	E	L	I	R	H	N	L	V	V	F	R	G	G	E	G	A	L	Q	V	L	P	P	L	V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y	L	R	Q	D	D	V	Q	E	A	Y
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	Q	N	Y	Y	T	G	N	F	V	Q	C	L	Q	E	I	E	K	F	S	K	V	T	D	N	T	L	L	F	Y	K	A	K	T	L	L	A	L	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	S	Q	D	P	T	S	K	L	G	K	V	L	D	L	Y	V	Q	F	L	D	T	K	N	I
Template Known Secondary structure							T	T	T											T	S	T	T																	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.						S		S	T	T												T	S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.														.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	I	K	D	L	E	P	T	T	P	Q	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S	R	D	H	M	K	I	A	Q	Q	F	F	Q	L	V	G	G	S	A	S	E	C	D	T	I	P	G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F
Query Conservation
Alig confidence															.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		E	E	L	E	N	L	L	K	D	K	Q	N	S	.	.	.	.	P	Y	E	L	Y	L	L	A	T	A	Q	A	I	L	G	D	L	D	K	S	L	E	T	C	V	E	G	I	D	N	D	E	A	E	G	T	T	E	L	L	L	L	A	I	E	V	A	L	L	N	N	N	V	S	T	A	S	T	I	F	D	N	Y
Template Known Secondary structure							T	T	T	T	S				.	.	.	.															T														T	T	T	T	S	S	S															T	T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.					.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		386	.	.	.	390	.	.									.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																																																																	.
Query SS confidence									.	.	.	.	.	.	.	.																																																																	.
Query Sequence		K	S	Y	F	Y	N	D	.	.	.	.	.	.	.	.	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A	F	L	L	I	Q	S	E	K	M	K	N	D	Y	I	Y	L	S	W	L	A	R	C	Y	I	M	N	K	K	P	R	L	A	W	E	L	Y	L	K	M	E	T	.
Query Conservation									.	.	.	.	.	.	.	.																																																																	.
Alig confidence									.	.	.	.	.	.	.	.																																	.	.																															.
Template Conservation																																																	.	.
Template Sequence		T	N	A	I	E	D	T	V	S	G	D	N	E	X	I	L	N	L	A	E	S	Y	I	K	F	A	T	N	K	E	T	A	T	S	N	F	Y	Y	Y	E	E	L	S	Q	T	F	P	.	.	T	W	K	T	Q	L	G	L	L	N	L	H	L	Q	Q	R	N	I	A	E	A	Q	G	I	V	E	L	L	L	S	D
Template Known Secondary structure			T	T		T	T	T			S	S	T																	T	T	T	T	T													S		.	.	S														T	T														S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
												457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	S	G	E	S	F	S	L	L	Q	L	I	A	N	D	C	Y	K	M	G	Q	F	Y	Y	S	A	K	A	F	D	V	L	E	R	L	D	P	N	P	E	Y	W	E	G	K	R	G	A	C	V	G	I	F	Q	M	I	I	A	G	R
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																.	.
Template Sequence		Y	Y	S	V	E	Q	K	E	N	A	V	L	Y	K	P	T	F	L	A	N	Q	I	T	L	A	L	X	Q	G	L	.	.	D	T	E	D	L	T	N	Q	L	V	K	L	D	H	E	H	A	F	I	K	H	H	Q	E	I	D	A	K	F	D	E	L	V	R	K	Y	D
Template Known Secondary structure					T	T	T						T	T															T	T		.	.	T	T										T	T			S																			T	T
Template Predicted Secondary structure																																.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions