Job Description A0AVF1 Confidence 59.36% Date Sat Jun 16 10:27:57 BST 2012 Rank 145 Aligned Residues 132 % Identity 13% Template c3mv2A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 2.90 Å

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		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	P	G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	F	Y	N	D	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A	F	L	L	I	Q	S	E	K	M	K	N	D	Y	I	Y	L	S	W	L	A	R	C
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	N	E	K	M	N	E	G	Y	K	N	F	K	L	N	K	P	D	I	A	I	E	C	F	R	E	A	I	Y	R	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	M	V	D	D	A	E	D	E	K	L	A	H	K	I	L	E	T	A	R	E	Y	I	L	G	L	S	I	E	L	E	R	R
Template Known Secondary structure																T	T																		.	.	.	.	.	.	.	.	.	.	.	.	.	T			B		S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		989	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.														.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.					.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		Y	I	M	N	K	K	P	R	L	A	W	E	L	Y	L	K	M	E	T	S	G	E	S	F	S	.	.	.	.	L	L	Q	L	I	A	N	D	C	Y	K	M	G	Q	F	Y	Y	S	A	K	A	F	D	V	L	E	R	L	D	P	N	P	E	Y	W	E	G	K	R	G
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		S	L	K	E	G	N	T	V	R	M	L	E	L	A	A	Y	F	T	K	A	K	L	S	P	I	H	R	T	N	A	L	Q	V	A	M	S	Q	H	F	K	H	K	N	F	L	Q	A	S	Y	F	A	G	E	F	L	K	I	I	S	S	G	P	R	A	E	Q	A	R	K
Template Known Secondary structure		T			T	T												G	G	G	S																					T	T														T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		1056	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions