Job Description A0AVF1 Confidence 96.98% Date Sat Jun 16 10:27:57 BST 2012 Rank 128 Aligned Residues 102 % Identity 18% Template c3mkqB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	F	Y	N	D	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A	F	L	L	I	Q	S	E	K	M	K	N	D	Y	I	Y	L	S	W	L	A	R	C	Y	I	M	N	K	K	P	R	L
Query Conservation
Alig confidence																					.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Sequence		D	L	A	L	E	Y	G	N	L	D	A	A	L	D	E	A	K	K	L	.	.	.	.	.	N	D	S	I	T	W	E	R	L	I	Q	E	A	L	A	Q	G	N	A	S	L	A	E	M	I	Y	Q	T	Q	H	S	F	D	.	.	.	.	.	.	.	.	.	K	L	S	F	L	Y	L	V	T	G	D	V	N	K
Template Known Secondary structure							T	T													.	.	.	.	.																T	T												T	T				.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure																					.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.						.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.										.	.	.	.	710	.	.	.	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	E	L	Y	L	K	M	E	T	S	G	E	S	F	S	L	L	Q	L	I	A	N	D	C	Y	K	M	G	Q	F	Y	Y	S	A	K	A	F	D	V
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		L	S	K	M	Q	N	I	A	Q	T	R	E	D	F	.	.	.	.	G	S	M	L	L	N	T	F	Y	N	N	S	T	K	E	R	S	S	I	F	A	E
Template Known Secondary structure												T	T			.	.	.	.											T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		720	.	.	.	.	.	.	.	.	.	730	.	.	.					.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions