Job Description A0AVF1 Confidence 98.16% Date Sat Jun 16 10:27:57 BST 2012 Rank 121 Aligned Residues 141 % Identity 21% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.									.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.
Query Sequence		K	L	E	E	L	L	S	K	R	D	F	T	G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	.	.	.	.	.	.	.	.	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T
Query Conservation																																																								.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		K	F	E	L	A	L	K	V	G	Q	L	T	L	A	R	D	L	L	T	.	.	.	.	.	D	E	S	A	E	M	K	W	R	A	L	G	D	A	S	L	Q	R	F	N	F	K	L	A	I	E	A	F	T	N	A	H	D	L	E	S	L	F	L	L	H	S	S	F	N	N	K	E	G	L	V	T	L	A	K	D
Template Known Secondary structure										T										T	.	.	.	.	.	T																	T	T													T												T	T
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.						.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	F	L	G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	T	T	G	K	F	N	L	A	F	N	A	Y	W	I	A	G	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	A	K	D	L	L	I	K	S	Q	R	F	S	E	A	A	F	L	G	S	T	Y	G	L	G
Template Known Secondary structure					T	T													T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T												T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.																																			.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	E	Y	L	A	L	N	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	E	V	N	D	I	V	T	K	W	K	E	N	L	I	L	N	G	K	N	T	V	S	E	R	V	C
Template Known Secondary structure																		T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions