Job Description A0AVF1 Confidence 99.57% Date Sat Jun 16 10:27:57 BST 2012 Rank 78 Aligned Residues 174 % Identity 13% Template c3ly8A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:transcriptional activator cadc; PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc Resolution 1.90 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.											.	.
Predicted Secondary structure																													.	.	.																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	R	G	V	Q	H	T	D	K	R	K	K	K	G	R	K	I	P	K	L	E	E	L	L	S	K	.	.	.	R	D	F	T	G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	.	.	.	.	.	.	.	.	.	.	R	A
Query Conservation																													.	.	.																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	T	L	Q	K	I	L	P	H	R	G	A	L	L	T	N	F	Y	Q	A	H	D	Y	L	L	H	G	D	D	K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S	P	E	F	T	Y	A	R	A	E	K	A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T
Template Known Secondary structure									S		S	S	G	G	G															S																			T	T																			S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L	V	K	G	K	T	D	E	S	Y	Q	A	I	N	T	G	I	D	L	E	M	S	W	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	L
Template Known Secondary structure								T		G	G	G	T	T																T																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.																												.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E	Y	L	A	L	N	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L
Query Conservation
Alig confidence																																										.	.
Template Conservation																																										.	.
Template Sequence		L	G	K	V	Y	E	M	K	G	M	N	R	E	A	A	E	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	W	I	E	N	G	I	F	Q	.	.	T	S	V	P	Y	V	V	P	Y	L	D	K	F	L
Template Known Secondary structure									T	T																S		S										S	S	S		.	.
Template Predicted Secondary structure																																										.	.
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.			.	.	.	.	500	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions