Job Description A0AVF1 Confidence 87.80% Date Sat Jun 16 10:27:57 BST 2012 Rank 138 Aligned Residues 190 % Identity 13% Template c3lpzA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:get4 (yor164c homolog); PDBTitle: crystal structure of c. therm. get4 Resolution 1.98 Å

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		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		D	H	M	K	I	A	Q	Q	F	F	Q	L	V	G	G	S	A	.	.	.	S	E	C	D	T	I	P	G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	F	Y	N	D	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E
Query Conservation																			.	.	.
Alig confidence																			.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	I	E	R	I	I	A	R	L	Q	R	R	I	A	E	G	Q	P	E	E	Q	Y	E	A	A	Q	E	T	R	L	V	A	A	R	Y	S	K	Q	G	N	W	A	A	A	V	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	S	V	S	Q	T	L	L	R	S	G	Q	G	G	S	G	G
Template Known Secondary structure																																								T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50															.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.					.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.										.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure											.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		E	A	F	L	L	I	Q	S	E	.	.	.	.	K	M	K	N	D	Y	I	Y	L	S	W	L	A	R	C	Y	I	M	N	K	K	P	R	L	A	W	E	L	Y	L	K	M	E	T	.	.	.	.	.	.	.	.	.	S	G	E	S	F	S	L	L	Q	L	I	A	N	D	C	Y	K	M	G	Q	F	Y	Y	S
Query Conservation											.	.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	A	V	L	L	V	D	T	F	R	Q	A	G	Q	R	V	D	G	A	S	R	G	K	L	L	G	C	L	R	L	F	Q	P	G	E	P	V	R	K	R	F	V	K	E	M	I	D	W	S	K	K	F	G	D	Y	P	A	G	D	P	E	L	H	H	V	V	G	T	L	Y	V	E	E	G	E	F	E	A	A
Template Known Secondary structure															T																T	T	S		T	T																			S	S		T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	F	D	V	L	E	R	L	D	P	N	P	E	Y	W	E	G	K	R	G	A	C	V	G	I	F	Q	M	I	I	A	G	R	E	P	K	E	T	L	R	E	V	L	H	L	L	R	S	T	G	N	T	Q	V	E	Y	M	I	R	I	M	K	K
Query Conservation
Alig confidence						.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		E	K	H	L	.	.	.	.	.	V	L	G	T	K	E	S	P	E	V	L	A	R	M	E	Y	E	W	Y	K	Q	D	E	S	H	T	A	P	L	Y	C	A	R	A	V	L	P	Y	L	L	V	A	N	V	R	A	A	N	T	A	Y	R	I	F	T	S
Template Known Secondary structure						.	.	.	.	.	T	T	S		T	T															T	S		G	G	G															T	T
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		149	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions