Job Description A0AVF1 Confidence 95.78% Date Sat Jun 16 10:27:57 BST 2012 Rank 133 Aligned Residues 210 % Identity 14% Template c3kaeC_ PDB info PDB header:protein binding Chain: C: PDB Molecule:possible protein of nuclear scaffold; PDBTitle: cdc27 n-terminus Resolution 2.30 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	I	P	K	L	E	E	L	L	S	K	R	D	F	T	G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L
Query Conservation
Alig confidence																													.	.	.																														.	.	.	.	.
Template Conservation																													.	.	.																														.	.	.	.	.
Template Sequence		K	L	I	G	K	I	C	K	S	I	R	Y	R	D	Y	E	T	A	I	F	L	A	A	C	L	L	P	.	.	.	C	K	P	E	Y	R	M	L	M	S	I	V	L	Y	L	N	G	E	Y	T	R	A	L	F	H	L	H	K	L	.	.	.	.	.	N	T	C	T	S	K	Y	Y	E	S	L	C	Y	K	K	K
Template Known Secondary structure													T	T															.	.	.			S	T	T											T	T											T		.	.	.	.	.		B														T
Template Predicted Secondary structure																													.	.	.																														.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	.	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E
Query Conservation																					.
Alig confidence																					.																						.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.
Template Sequence		K	D	Y	K	K	A	I	K	S	L	E	S	I	L	E	G	K	V	E	R	D	P	D	V	D	A	R	I	Q	E	M	F	V	D	P	G	D	E	E	F	F	.	.	.	.	.	.	.	.	.	E	S	L	L	G	D	L	C	T	L	S	G	Y	R	E	E	G	I	G	H	Y	V	R	S	F	G	K	S	F	L
Template Known Secondary structure		T														T	T		S	B											T	T	S			T	T						.	.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		184	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.														.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	A	L	N	.	.	.	.	.	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I	P	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	A	L	N	L	K	A	C	N	H	F	R	L	Y	N	G	R	A	A	E	A	E	L	K	S	L
Query Conservation							.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	P	V	E	N	L	L	L	E	N	K	V	P	Q	K	R	D	R	R	G	I	E	E	E	Y	V	S	D	S	I	E	F	H	E	S	L	S	P	S	L	V	K	K	Y	M	E	H	V	P	G	I	G	S	Y	F	I	S	N	A	A	R	R	Y	F	N	L	G	M	N	D	K	S	K	A	C	F	E	L	V
Template Known Secondary structure											T	T										S																										T	T	T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		246	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	N	A	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	K	D	P	M
Template Known Secondary structure					S	T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions