Job Description A0AVF1 Confidence 99.89% Date Sat Jun 16 10:27:57 BST 2012 Rank 32 Aligned Residues 245 % Identity 10% Template c3draA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp Resolution 1.80 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	.	.	G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L
Query Conservation																																																						.	.
Alig confidence																																																						.	.
Template Conservation
Template Sequence		D	E	D	Y	K	Q	I	M	G	L	L	L	A	L	M	K	A	E	E	Y	S	E	R	A	L	H	I	T	E	L	G	I	N	E	L	A	S	H	Y	T	I	W	I	Y	R	F	N	I	L	K	N	L	P	N	R	N	L	Y	D	E	L	D	W	C	E	E	I	A	L	D	N	E	K	N	Y	Q	I	W	N	Y
Template Known Secondary structure																		T	T			S															T	T														T		T	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E	Y	L	A	L	N	V	Y	V	A	L	C	Y	Y	K	.	.	L	D	Y	Y	D	V	S	Q	E	V	L
Query Conservation																																																																					.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Q	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	Q	I	M	E	L	N	N	N	D	F	D	P	Y	R	E	F	D	I	L	E	A	M	L	S	S	D	P	K	N	H	H	V	W	S	Y	R	K	W	L	V	D	T	F	D	L	H	N	D	A	K	E	L	S	F	V
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T				T															T	T															T	T		T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.																				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.							.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.																																		.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.																																		.	.	.	.	.	.
Query Sequence		A	V	Y	L	Q	Q	I	P	D	S	T	I	A	L	N	L	K	A	C	N	H	F	R	.	.	.	.	.	.	L	Y	N	G	R	A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	E	F	A	K	E	L	I	R	H	N	L	.	.	.	.	.	.	V	V	F	R	G	G	E	G	A	L	Q	V
Query Conservation																									.	.	.	.	.	.																																		.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	V	I	D	T	D	L	K	N	N	S	A	W	S	H	R	F	F	L	L	F	S	K	K	H	L	A	T	D	N	T	I	D	E	E	L	N	Y	V	K	D	K	I	V	K	C	P	Q	N	P	S	T	W	N	Y	L	L	G	I	H	E	R	F	D	R	S	I	T	Q	L	E	E	F	S	L	Q	F	V	D
Template Known Secondary structure									T	T														S	S	G	G	G																					S	S															T	T			G	G	G	G						T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		L	P	P	L	V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y	L	R	Q	D	D	V	Q	E	A	Y	N	L	I	K	D	.	L	E	P	T	T	P
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		L	E	K	D	Q	V	T	S	S	F	A	L	E	T	L	A	K	I	Y	T	Q	Q	K	K	Y	N	E	S	R	T	V	Y	D	L	L	K	S	K	Y	N	P
Template Known Secondary structure		G	G	G	T			S															T	T															T	T		G
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions