Job Description A0AVF1 Confidence 100.00% Date Sat Jun 16 10:27:57 BST 2012 Rank 7 Aligned Residues 473 % Identity 12% Template c2gw1A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:mitochondrial precursor proteins import receptor; PDBTitle: crystal structure of the yeast tom70 Resolution 3.00 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	R	K	K	K	G	R	K	I	P	K	L	E	E	L	L	S	K	R	D	F	T	G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		E	K	D	K	Y	A	L	A	L	K	D	K	G	N	Q	F	F	R	N	K	K	Y	D	D	A	I	K	Y	Y	N	W	A	L	E	L	K	E	.	D	P	V	F	Y	S	N	L	S	A	C	Y	V	S	V	G	D	L	K	K	V	V	E	M	S	T	K	A	L	E	L	K	P	D	Y	S	K	V	L	L	R	R
Template Known Secondary structure																				T	S																		.																T																	S
Template Predicted Secondary structure																																							.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	T	Y	F	F	L	G	M	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	A	N	E	G	L	G	K	F	A	D	A	M	F	D	L	S	V	L	S	L	N	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	D	A	S	I	E	P	M	L	E	R	N	L	N	K	Q	A	M	S	K	L	K	E	K	N	L	P	S
Template Known Secondary structure								T	T															S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T																	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.																											.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	N	R	E	Y	L	A	L	N	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I	P	D	S	T	I	A	L	N	L	K	A	C	N	H	F	R	L	Y	N	G	R	A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	E	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	S	M	A	S	F	F	G	I	F	K	P	E	L	T	F	A	N	Y	D	E	S	N	E	A	D	K	E	L	M	N	G	L	S	N	L	Y	K	R	S	P	E	S	Y	D	K	A	D	E	S	F	T	K	A	A	R	L	F	E	E	Q	L	D	K	N	N	E	D	E	K	L	K	E	K	L	A	I	S	L
Template Known Secondary structure										T	T	S							S	S			S	S															S	S			T	T																				T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		E	L	I	R	H	N	L	V	V	F	R	G	G	E	G	A	L	Q	V	L	P	P	L	.	.	V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y	L	R	Q	D	D	V	Q	E	A	Y	N	L	I	K	D	L	E	P	T	T	P	Q	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S
Query Conservation																									.	.
Alig confidence																									.	.																																							.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		E	H	T	G	I	F	K	F	L	K	N	D	P	L	G	A	H	E	D	I	K	K	A	I	E	L	F	P	R	V	N	S	Y	I	Y	M	A	L	I	M	A	D	R	N	D	S	T	E	Y	Y	N	Y	F	D	K	A	L	K	L	D	S	N	N	.	.	.	.	S	S	V	Y	Y	H	R	G	Q	M	N	F	I
Template Known Secondary structure											S	S																															T	S	S			T	T	G	G	G							T	T		T	T		.	.	.	.	T
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.					.	.	.	400	.	.	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	H	M	K	I	A	Q	Q	F	F	Q	L	V	G	G	S	A	S	E	C	D	T	I	P	G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S	F	K	S	Y	F	Y	N	D	D	I	F	N	F	N	Y	A	Q	A	K	A	A	T	G	N	T	S	E	G	E	E	A
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		L	Q	N	Y	D	Q	A	G	K	D	F	D	K	A	K	E	L	.	.	D	P	E	N	I	F	P	Y	I	Q	L	A	C	L	A	Y	R	E	N	K	F	D	D	C	E	T	L	F	S	E	A	K	R	K	F	P	E	A	P	E	V	P	N	F	F	A	E	I	L	T	D	K	N	D	F	D	K	A	L	K	Q
Template Known Secondary structure		T	T		T	T												T	.	.		S	S		S										T	T	T	T	T																S	T	T		S													T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.									.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																													.
Query SS confidence													.	.	.	.	.	.	.	.																													.
Query Sequence		F	L	L	I	Q	S	E	K	M	K	N	.	.	.	.	.	.	.	.	D	Y	I	Y	L	S	W	L	A	R	C	Y	I	M	N	K	K	P	R	L	A	W	E	L	Y	L	K	M	.	E	T	S	G	E	S	F	S	L	L	Q	L	I	A	N	D	C	Y	K	M	G	Q	F	Y	Y	S	A	K	A	F	D	V
Query Conservation													.	.	.	.	.	.	.	.																													.
Alig confidence													.	.	.	.	.	.	.	.																													.
Template Conservation
Template Sequence		Y	D	L	A	I	E	L	E	N	K	L	D	G	I	Y	V	G	I	A	P	L	V	G	K	A	T	L	L	T	R	N	P	T	V	E	N	F	I	E	A	T	N	L	L	E	K	A	S	K	L	D	P	R	S	E	Q	A	K	I	G	L	A	Q	M	K	L	Q	Q	E	D	I	D	E	A	I	T	L	F	E	E
Template Known Secondary structure											T	S	S	S		S	S		S												T	S			T	T																	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		L	E	R	L	D	P	N	P	E	Y	W	E	G	K	R	G	.	.	A	C	V	G	I	F	Q	M	I	I	A	G	R	E	P	K	E	T	L	R	E
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		S	A	D	L	A	R	T	M	E	E	K	L	Q	A	I	T	F	A	E	A	A	K	V	Q	Q	R	I	R	S	D	P	V	L	A	K	K	I	Q	E
Template Known Secondary structure							S	S																					T	S	T
Template Predicted Secondary structure
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.