Phyre 2 alignment of A0AVF1 with c1b89A

Job Description A0AVF1
Confidence 96.74% Date Sat Jun 16 10:27:57 BST 2012

Rank 131 Aligned Residues 271

% Identity 14% Template c1b89A_

PDB info PDB header:clathrin Chain: A: PDB Molecule:protein (clathrin heavy chain); PDBTitle: clathrin heavy chain proximal leg segment (bovine)

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	P	K	L	E	E	L	L	S	K	R	D	F	T	G	A	I	T	L	L	E	F	K	R	H	V	G	E	E	E	E	D	T	N	L	W	I	G	Y	C	A	F	H	L	G	D	Y	K	R	A	L	E	E	Y	E	N	A	T	K	E	E	N	C	N	S	E	V	W	V	N	L	A	C	T	Y	F	F	L	G	M
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence	L	A	E	L	E	E	F	I	N	G	P	M	Y	D	A	A	K	L	L	Y	N	N	V	S	N	.	.	.	.	.	.	.	.	F	G	R	L	A	S	T	L	V	H	L	G	E	Y	Q	A	A	V	D	G	A	R	K	A	.	.	.	.	.	N	S	T	R	T	W	K	E	V	C	F	A	C	V	D	G	K	E
Template Known Secondary structure					T	T	T	T	T				T	T	T								T	T		.	.	.	.	.	.	.	.										T	T	T													.	.	.	.	.	T															T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
	1183	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.									.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.						.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	K	Q	A	E	A	A	G	F	K	A	S	K	S	R	L	Q	N	R	L	L	F	H	L	A	H	K	F	N	D	E	K	K	L	M	S	F	H	Q	N	L	Q	D	V	T	E	D	Q	L	S	L	A	S	I	H	Y	M	R	S	H	Y	Q	E	A	I	D	I	Y	K	R	I	L	L	D	N	R	E	Y	L	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	R	L	A	Q	X	C	G	L	H	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	A	D	E	L	E	E	L	I	N	Y	Y	Q	D	R	G	Y	F	E	E	L	I	T	X	L	E	A	A	L	G	L	E	R	A	H	X	G
Template Known Secondary structure							T	T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T															T	T													T	T	S	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1266	.	.	.	1270	.	.	.	.	.	.	.																															.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.

	187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.									.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.
Query Sequence	L	N	V	Y	V	A	L	C	Y	Y	K	L	D	Y	Y	D	V	S	Q	E	V	L	A	V	Y	L	Q	Q	I	P	.	.	.	.	.	.	.	.	D	S	T	I	A	L	N	L	K	A	C	N	H	F	R	L	Y	N	G	R	A	A	E	A	E	L	K	S	L	M	D	N	A	S	S	S	F	E	F	A	K	E
Query Conservation																															.	.	.	.	.	.	.	.
Alig confidence								.																							.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence	X	F	T	E	L	A	I	.	L	Y	S	K	F	K	P	Q	K	X	R	E	H	L	E	L	F	W	S	R	V	N	I	P	K	V	L	R	A	A	E	Q	A	H	L	W	A	E	L	V	F	L	Y	D	K	Y	E	E	Y	D	N	A	I	I	T	X	X	N	H	P	T	D	A	W	K	E	G	Q	F	K	D	I
Template Known Secondary structure								.				T	T													S	T	T	S											T	T	T												T	T												S	T	T	T	T
Template Predicted Secondary structure								.
Template SS confidence
	1316	.	.	.	1320	.	.		.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	I	R	H	N	L	V	V	F	R	G	G	E	G	A	L	Q	V	L	P	P	L	V	D	V	I	P	E	A	R	L	N	L	V	I	Y	Y	L	R	Q	D	D	V	Q	E	A	Y	N	L	I	K	D	L	E	P	T	T	P	Q	E	Y	I	L	K	G	V	V	N	A	A	L	G	Q	E	M	G	S	R	D	H
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	N	V	E	L	Y	Y	R	A	I	Q	F	Y	L	E	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	L	L	N	D	L	L	X	V	L	S	P	R	L	D
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G									G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1395	.	.																					.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.																								.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.

	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.										.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.
Query Sequence	M	K	I	A	Q	Q	F	F	Q	L	V	G	G	S	A	.	.	.	.	.	.	.	.	.	S	E	C	D	T	I	P	G	R	Q	C	M	A	S	C	F	F	L	L	K	Q	F	D	D	V	L	I	Y	L	N	S
Query Conservation																.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	T	R	A	V	N	Y	F	S	K	V	K	Q	L	P	L	V	K	P	Y	L	R	S	V	Q	N	H	N	N	K	S	V	N	E	S	L	N	N	L	F	I	T	E	E	D	Y	Q	A	L	R	T	S	I	D	A
Template Known Secondary structure											T	T		T	T	T	T									T	T																T	T
Template Predicted Secondary structure
Template SS confidence
	1432	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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