Email l.a.kelley@imperial.ac.uk Description Q01804 Date Wed Jun 6 09:57:10 BST 2012 Unique Job ID a723a9e39fe1c18d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3c0rC_ 100.0 24 PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin 2 c3pfyA_ 100.0 32 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 3 c3pt2A_ 99.9 20 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin 4 c3phuA_ 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:rna-directed rna polymerase l; PDBTitle: otu domain of crimean congo hemorrhagic fever virus 5 c2zfyA_ 99.4 33 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otub1; PDBTitle: crystal structure of human otubain 1 6 c4dhjL_ 99.4 24 PDB header:hydrolase/signaling protein/ligase Chain: L: PDB Molecule:ubiquitin thioesterase otubain-like; PDBTitle: the structure of a ceotub1 ubiquitin aldehyde ubc13~ub complex 7 d1tffa_ 99.3 21 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Ubiquitin thiolesterase protein OTUB2 (Otubain-2) 8 c4a4fA_ 97.2 29 PDB header:rna binding protein Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30; PDBTitle: solution structure of spf30 tudor domain in complex with2 symmetrically dimethylated arginine 9 d2d9ta1 97.1 28 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 10 d1mhna_ 96.9 26 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 11 c2d9tA_ 96.8 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tudor domain-containing protein 3; PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse 12 c3pnwX_ 96.4 27 PDB header:protein binding/immune system Chain: X: PDB Molecule:tudor domain-containing protein 3; PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab 13 c3dkbA_ 96.4 16 PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3; PDBTitle: crystal structure of a20, 2.5 angstrom 14 c1g5vA_ 96.1 25 PDB header:translation Chain: A: PDB Molecule:survival motor neuron protein 1; PDBTitle: solution structure of the tudor domain of the human smn2 protein 15 c2vfjA_ 95.4 13 PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor; PDBTitle: structure of the a20 ovarian tumour (otu) domain 16 d2diqa1 94.5 21 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 17 c2hqxB_ 93.7 13 PDB header:transcription Chain: B: PDB Molecule:p100 co-activator tudor domain; PDBTitle: crystal structure of human p100 tudor domain conserved2 region 18 d2hqxa1 93.7 13 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 19 c2eqkA_ 92.1 13 PDB header:transcription Chain: A: PDB Molecule:tudor domain-containing protein 4; PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4 20 c2wacA_ 92.0 24 PDB header:splicing Chain: A: PDB Molecule:cg7008-pa; PDBTitle: extended tudor domain of drosophila melanogaster tudor-sn (2 p100) 21 c3qiiA_ not modelled 91.6 19 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 22 c3p8dB_ not modelled 91.4 19 PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form) 23 c2equA_ not modelled 90.0 22 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 24 c3bdlA_ not modelled 85.8 15 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn 25 c3zrhA_ not modelled 85.5 21 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase zranb1; PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd) 26 d2i8da1 not modelled 74.4 22 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 27 c1xniI_ not modelled 70.0 18 PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 28 d1ccda_ not modelled 69.6 20 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 29 c1puoA_ not modelled 67.9 17 PDB header:allergen Chain: A: PDB Molecule:major allergen i polypeptide, fused chain 2, PDBTitle: crystal structure of fel d 1- the major cat allergen 30 c3nthA_ not modelled 65.2 13 PDB header:transcription Chain: A: PDB Molecule:maternal protein tudor; PDBTitle: crystal structure of tudor and aubergine [r13(me2s)] complex 31 c3db3A_ not modelled 63.6 14 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide 32 d1utra_ not modelled 59.7 20 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 33 d1wn7a2 57.7 18 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 34 c2jvvA_ not modelled 57.2 23 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 35 c2kvqG_ not modelled 57.2 23 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 36 d1utga_ not modelled 55.6 13 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 37 c3q1jA_ not modelled 54.0 28 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 38 d1nppa2 not modelled 53.5 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 39 d2guka1 not modelled 53.0 18 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 40 c2o4xA_ not modelled 52.9 15 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of human p100 tudor domain 41 d1nz9a_ not modelled 51.7 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 42 d1poia_ not modelled 51.1 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 43 c2zfuA_ not modelled 49.9 16 PDB header:nuclear protein Chain: A: PDB Molecule:cerebral protein 1; PDBTitle: structure of the methyltransferase-like domain of nucleomethylin 44 d1vhka1 not modelled 49.8 17 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 45 c2xzmL_ not modelled 47.7 38 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s12; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 46 c1ssfA_ not modelled 44.0 16 PDB header:cell cycle Chain: A: PDB Molecule:transformation related protein 53 binding PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617) 47 c2zmeB_ not modelled 42.9 23 PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 48 d1nxza1 not modelled 42.3 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 49 d2oc6a1 not modelled 41.7 19 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 50 c3askC_ not modelled 41.2 14 PDB header:ligase/dna binding protein Chain: C: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: structure of uhrf1 in complex with histone tail 51 c2kl4A_ not modelled 40.8 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2032 protein; PDBTitle: nmr structure of the protein nb7804a 52 d2f5ka1 not modelled 40.1 14 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo barrel domain 53 c2egwB_ not modelled 35.3 17 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 54 c3nafA_ not modelled 34.8 12 PDB header:ion transport Chain: A: PDB Molecule:calcium-activated potassium channel subunit alpha-1; PDBTitle: structure of the intracellular gating ring from the human high-2 conductance ca2+ gated k+ channel (bk channel) 55 d2g7sa2 not modelled 34.3 14 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 56 c3kopB_ not modelled 33.1 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution 57 c2db0B_ not modelled 33.0 12 PDB header:protein binding Chain: B: PDB Molecule:253aa long hypothetical protein; PDBTitle: crystal structure of ph0542 58 d2cp6a1 not modelled 33.0 23 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 59 c2ro0A_ not modelled 32.1 21 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase esa1; PDBTitle: solution structure of the knotted tudor domain of the yeast2 histone acetyltransferase, esa1 60 c1zv4X_ not modelled 31.9 9 PDB header:signaling protein Chain: X: PDB Molecule:regulator of g-protein signaling 17; PDBTitle: structure of the regulator of g-protein signaling 17 (rgsz2) 61 c2zkql_ not modelled 31.6 41 PDB header:ribosomal protein/rna Chain: L: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map 62 d1wgsa_ not modelled 31.4 21 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo barrel domain 63 c2ec3A_ not modelled 31.0 20 PDB header:cell adhesion Chain: A: PDB Molecule:fibronectin; PDBTitle: solution structure of the 11th fn1 domain from human2 fibronectin 1 64 c2eqmA_ not modelled 30.9 28 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 65 d1v38a_ not modelled 29.4 29 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 66 c2py8B_ not modelled 28.5 13 PDB header:chaperone Chain: B: PDB Molecule:hypothetical protein rbcx; PDBTitle: rbcx 67 d3bl2a1 not modelled 27.9 31 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 68 c3m1rF_ not modelled 27.6 21 PDB header:hydrolase Chain: F: PDB Molecule:formimidoylglutamase; PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168 69 c3s63B_ not modelled 27.1 29 PDB header:lipid binding protein Chain: B: PDB Molecule:saposin-like protein; PDBTitle: saposin-like protein na-slp-1 70 c1m1gB_ not modelled 26.2 20 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 71 c1ofsC_ not modelled 25.7 19 PDB header:lectin Chain: C: PDB Molecule:pea lectin alpha chain; PDBTitle: pea lectin-sucrose complex 72 c2penE_ not modelled 25.3 21 PDB header:chaperone Chain: E: PDB Molecule:orf134; PDBTitle: crystal structure of rbcx, crystal form i 73 d2ejna1 not modelled 25.3 16 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 74 c1w7pD_ not modelled 25.0 20 PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) 75 c2ekoA_ not modelled 25.0 17 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase htatip; PDBTitle: solution structure of ruh-073, a pseudo chromo domain from2 human cdna 76 c1ngmM_ not modelled 24.1 28 PDB header:transcription/dna Chain: M: PDB Molecule:transcription initiation factor tfiid; PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex 77 c1rm1A_ not modelled 24.1 28 PDB header:transcription/dna Chain: A: PDB Molecule:tata-box binding protein; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex 78 d2pbla1 not modelled 23.9 10 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase 79 c3iuwA_ not modelled 23.9 16 PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution 80 d2do3a1 not modelled 23.8 8 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 81 c1s1hL_ not modelled 23.5 38 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s23; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 82 c3fwcN_ not modelled 22.0 18 PDB header:cell cycle, transcription Chain: N: PDB Molecule:nuclear mrna export protein sac3; PDBTitle: sac3:sus1:cdc31 complex 83 c2lbaA_ not modelled 21.5 9 PDB header:lipid binding protein Chain: A: PDB Molecule:babp protein; PDBTitle: solution structure of chicken ileal babp in complex with2 glycochenodeoxycholic acid 84 d2peqa1 not modelled 21.2 21 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 85 d1nh2a2 not modelled 20.7 23 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 86 d1w98b1 not modelled 20.6 10 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 87 d1i94l_ not modelled 20.5 32 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 88 c3pzlA_ not modelled 20.2 18 PDB header:hydrolase Chain: A: PDB Molecule:agmatine ureohydrolase; PDBTitle: the crystal structure of agmatine ureohydrolase of thermoplasma2 volcanium 89 c3labA_ not modelled 20.1 18 PDB header: PDB COMPND: 90 c3kw2A_ not modelled 19.9 24 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 91 d1svma_ not modelled 19.4 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 92 d2py8a1 not modelled 19.2 11 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 93 d1vg5a_ not modelled 18.6 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 94 c3lhlA_ not modelled 18.4 24 PDB header:hydrolase Chain: A: PDB Molecule:putative agmatinase; PDBTitle: crystal structure of a putative agmatinase from clostridium difficile 95 c1qu2A_ not modelled 18.3 22 PDB header:ligase/rna Chain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin 96 c2eamA_ not modelled 17.9 33 PDB header:signaling protein Chain: A: PDB Molecule:putative 47 kda protein; PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein 97 d1tgoa2 not modelled 17.7 18 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 98 c3df0C_ not modelled 17.6 24 PDB header:hydrolase Chain: C: PDB Molecule:calpastatin; PDBTitle: calcium-dependent complex between m-calpain and calpastatin 99 d1cdwa2 not modelled 17.6 24 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain