Job Description Q01804 Confidence 99.93% Date Wed Jun 6 09:57:10 BST 2012 Rank 3 Aligned Residues 129 % Identity 20% Template c3pt2A_ PDB info PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin Resolution 2.50 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																	.	.																							.	.
Query SS confidence																																	.	.																							.	.
Query Sequence		K	L	G	L	Y	R	K	L	V	A	K	D	G	S	C	L	F	R	A	V	A	E	Q	V	L	H	S	Q	S	R	H	.	.	V	E	V	R	M	A	C	I	H	Y	L	R	E	N	R	E	K	F	E	A	F	I	.	.	E	G	S	F	E	E	Y	L	K	R	L	E	N	P	Q	E	W	V	G	Q	V	E	I
Query Conservation																																	.	.																							.	.
Alig confidence																																	.	.																							.	.
Template Conservation
Template Sequence		S	D	Y	F	E	I	V	R	Q	P	G	D	G	N	C	F	Y	H	S	I	A	E	L	T	X	P	N	K	T	D	H	S	Y	H	Y	I	K	R	L	T	E	S	A	A	R	K	Y	Y	Q	E	E	P	E	A	R	L	V	G	L	S	L	E	D	Y	L	K	R	X	L	S	D	N	E	W	G	S	T	L	E	A
Template Known Secondary structure		G	G	T								S	S	T	T											S	S	S			T	T	T																G	G	G		T	T																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		S	A	L	S	L	M	Y	R	K	D	F	I	I	Y	R	.	.	.	.	E	P	N	V	S	P	S	Q	V	T	E	N	N	F	P	E	K	V	L	L	C	F	S	N	G	N	H	Y	D	I	V	Y	P	I	K	Y	K	E
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		S	X	L	A	K	E	X	G	I	T	I	I	I	W	T	V	A	A	S	D	E	V	E	A	G	I	K	F	G	D	G	D	V	F	T	A	V	N	L	L	H	S	G	Q	T	H	F	D	A	L	R	I	L	P	Q	F	E
Template Known Secondary structure									T										T	T		B								S	S			T	T	T	S							T	T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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