Job Description Q01804 Confidence 42.89% Date Wed Jun 6 09:57:10 BST 2012 Rank 47 Aligned Residues 70 % Identity 23% Template c2zmeB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		G	D	Q	G	G	A	G	P	R	E	D	A	T	P	M	D	A	Y	L	R	K	L	G	L	.	.	.	Y	R	K	L	V	A	K	D	G	S	C	L	F	R	A	V	A	E	Q	V	L	H	S	Q	S	R	H	V	E	V	R	M	A	C	I	H	Y	L	R	E	N	R	E	K	F	E	A	F	I	E	G	S	F
Query Conservation																										.	.	.
Alig confidence																										.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	K	Q	G	D	I	T	E	D	E	T	I	R	F	K	S	Y	L	L	S	M	G	I	A	N	P	V	T	R	E	T	Y	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	Y	H	M	Q	L	A	K	Q	L	A	G	I	L	Q	V	P	L	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S			S												T	T					S	S		S	T	T			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.															.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Y	L	K	R	L	E	N	P	Q	E	W	V	G	Q	V	E	I	S	A	L	S	L	M	Y	R	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	R	G	G	I	M	S	L	T	E	V	Y	C	L	V	N	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions