Job Description Q01804 Confidence 99.44% Date Wed Jun 6 09:57:10 BST 2012 Rank 5 Aligned Residues 126 % Identity 33% Template c2zfyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otub1; PDBTitle: crystal structure of human otubain 1 Resolution 1.69 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Y	L	R	K	L	G	L	Y	R	K	L	V	A	K	D	G	S	C	L	F	R	A	V	A	E	Q	V	L	H	S	Q	S	R	H	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	L	H	K	K	Y	S	Y	I	R	K	T	R	P	D	G	N	C	F	Y	R	A	F	G	F	S	H	L	E	A	L	L	D	D	S	K	E	L	Q	R	F	K	A	V	S	A	K	S	K	E	D	L	V	S	Q	G	F	T	E	F	T	I	E	D	F	H	N	T	F	M	D	L	I	E	Q	V	E	K	Q
Template Known Secondary structure					T	T	T							B			S	S																T	T																						T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
																								64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.									.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.									.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	M	A	C	I	H	Y	L	R	E	N	R	E	K	F	E	A	F	I	E	G	.	.	S	F	E	E	Y	L	K	R	.	L	E	N	P	Q	E	W	V	G	Q	V	E	I	S	A	L	S	L	M	Y	R	K	D	F	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.									.
Template Conservation
Template Sequence		T	S	V	A	D	L	L	A	S	F	N	D	Q	S	T	S	D	Y	L	V	V	Y	L	R	L	L	T	S	G	Y	L	Q	R	E	S	K	F	F	E	H	F	I	E	G	G	R	T	V	K	E	F	C	Q	Q	E	V	E	P	M	C	K	E	S	D	H	I	H	I	I	A	L	A	Q	A	L	S	V	S	I	Q
Template Known Secondary structure												T	S																						T					G	G	G			S	S											T	S	S	T	T																T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		119	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		I	Y	.	.	.	R	E	P	N	V	S	P	S	Q	V	T	E	N	N	F	P	E	K	V	L	L	C	F	S	N	G	N	H	Y	D	I	V	Y
Query Conservation				.	.	.
Alig confidence				.	.	.																											.
Template Conservation																																	.
Template Sequence		V	E	Y	M	D	G	E	G	G	T	T	N	P	H	I	F	P	E	G	S	E	P	K	V	Y	L	L	Y	R	P	G	.	H	Y	D	I	L	Y
Template Known Secondary structure									S	S								S	T	T				S							T	T	.
Template Predicted Secondary structure																																	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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