Job Description Q01804 Confidence 24.10% Date Wed Jun 6 09:57:10 BST 2012 Rank 77 Aligned Residues 67 % Identity 28% Template c1rm1A_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:tata-box binding protein; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex Resolution 2.50 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		V	E	I	S	A	L	S	L	M	Y	R	K	D	F	I	I	Y	R	E	P	N	V	S	P	S	Q	V	T	E	N	N	F	P	E	K	V	L	L	C	F	S	N	G	N	H	Y	D	I	V	Y	P	.	I	K	Y	K	E	S	S	A	M	C	Q	S	L	L	Y	E	L	L	Y	E	K
Query Conservation																																																					.
Alig confidence													.						.																											.	.	.					.
Template Conservation													.						.																											.	.	.
Template Sequence		I	R	L	E	G	L	A	F	S	H	G	.	T	F	S	S	Y	.	E	P	E	L	F	P	G	L	I	Y	R	M	V	K	P	K	I	V	L	L	I	F	V	S	G	K	.	.	.	I	V	L	T	G	A	K	Q	R	E	E	I	Y	Q	A	F	E	A	I	Y	P	V	L	S	E	F
Template Known Secondary structure		B									T	T	.	T	T				.		T	T	T									T	T	T	T							T	T	S		.	.	.							S	S																		T
Template Predicted Secondary structure													.						.																											.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions