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| Job Description | Q01804 | | Confidence | 24.10% | Date | Wed Jun 6 09:57:10 BST 2012 |
| Rank | 76 | Aligned Residues | 67 |
| % Identity | 28% | Template | c1ngmM_ |
| PDB info |
PDB header:transcription/dna | Chain: M: PDB Molecule:transcription initiation factor tfiid; |
PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex
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| Resolution | 2.95 Å |
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104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | |
. | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
| Predicted Secondary structure | |
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| Query Sequence | |
V | E | I | S | A | L | S | L | M | Y | R | K | D | F | I | I | Y | R | E | P | N | V | S | P | S | Q | V | T | E | N | N | F | P | E | K | V | L | L | C | F | S | N | G | N | H | Y | D | I | V | Y | P | . |
I | K | Y | K | E | S | S | A | M | C | Q | S | L | L | Y | E | L | L | Y | E | K |
| Query Conservation | |
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| Template Sequence | |
I | R | L | E | G | L | A | F | S | H | G | . |
T | F | S | S | Y | . |
E | P | E | L | F | P | G | L | I | Y | R | M | V | K | P | K | I | V | L | L | I | F | V | S | G | K | . |
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I | V | L | T | G | A | K | Q | R | E | E | I | Y | Q | A | F | E | A | I | Y | P | V | L | S | E | F |
| Template Known Secondary structure | |
B |
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| Template Predicted Secondary structure | |
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170 | . | . | . | . | . | . | . | . | . | 180 | |
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. | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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