Return to main results Retrieve Phyre Job Id

Job DescriptionQ12888
Confidence99.84%DateTue Apr 3 15:01:59 BST 2012
Rank12Aligned Residues197
% Identity16%Templatec1z56C_
PDB info PDB header:ligaseChain: C: PDB Molecule:dna ligase iv; PDBTitle: co-crystal structure of lif1p-lig4p
Resolution3.92 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1727..1730.........1740.........1750.........1760.........1770.........1780.........1790.........1800......
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  TLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIA
Query Conservation                                                                               

 
Alig confidence 












..................




....




























.









Template Conservation   

 
  
 
 
 ..................     ....         
   
   

          .       

 
Template Sequence  NIFAGLLFYVLSD. . . . . . . . . . . . . . . . . . YVTED. . . . TGIRITRAELEKTIVEHGGKLIYNVILKR. HSIGDVRLIS
Template Known Secondary structure 



TT



S..................


....

SSSS


TTTS


SS


.

SS

Template Predicted Secondary structure 







..................




....














.




Template SS confidence 















































































   684.....690...... ...700. ........710.........720.........730 .........740
 
   1807..1810.........1820.........1830.........1840.... .....1850.... .....1860...
Predicted Secondary structure 














.




......................








Query SS confidence 





































.









. . . . . . . . . . . . . . . . . . . . . .








Query Sequence  DQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYR. NYLLPAGYSL. . . . . . . . . . . . . . . . . . . . . . EEQRILDWQ
Query Conservation      

 

   
    
     
              .          ......................         
Alig confidence 

..

































.









......................








Template Conservation    ..   

  
   
  

   

 


     
   
  

              
   

                 
Template Sequence  CK. . TTTECKALIDRGYDILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQ
Template Known Secondary structure 
S..

GGGGGGTTTT


B
SSTTSS
S




S
BS


GGGTGGGB
SSS
BSSS


TTS

Template Predicted Secondary structure 

..






























Template SS confidence 















































































   741. .......750.........760.........770.........780.........790.........800.........810........
 
   1864.....1870.........1880.........1890.........1900.........1910.........1920.........1930...
Predicted Secondary structure 









































..........
Query SS confidence 





































































. . . . . . . . . .
Query Sequence  PRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKC. . . . . . . . . .
Query Conservation                                                                        ..........
Alig confidence 

















...

















.........





















..........
Template Conservation                    ...       
   
      .........       
                        
Template Sequence  LSLPPMGELEIDSEVRRF. . . PLFIEMKIKLFGGKITDQ. . . . . . . . . QSLCNLIIIPYTDPILRKDCMNEVHEKIKEQI
Template Known Secondary structure  S







SS

S



...



TTS



.........SSS
S


SSTTTSSTTTTTT
Template Predicted Secondary structure 
















...





.........










Template SS confidence 















































































   819820.........830...... ...840.........850.... .....860.........870.........880......
 
   1934.....1940 .........1950.........1960
Predicted Secondary structure  ...


.







Query SS confidence  . . .






.



















Query Sequence  . . . AEALQLP. VVSQEWVIQCLIVGERIGFK
Query Conservation  ...       .                    
Alig confidence  ...






.



















Template Conservation             


  

  

     
 
 
Template Sequence  KASDTIPKIARVVAPEWVDHSINENCQVPEE
Template Known Secondary structure  TSSSS





TTTS


SS
Template Predicted Secondary structure 



















Template SS confidence 






























   906...910.........920.........930......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions