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Job DescriptionQ12888
Confidence64.62%DateTue Apr 3 15:01:59 BST 2012
Rank140Aligned Residues94
% Identity22%Templatec2zkqb_
PDB info PDB header:ribosomal protein/rnaChain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
Resolution8.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1847..1850.........1860.........1870... ......1880.........1890....
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Query Sequence  LLPAGYSLEEQRILDWQPRENPFQNLK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VLLVSDQQQNFLELWSEILMT
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Template Sequence  FLAAGTHLGGTN. . . LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAAT
Template Known Secondary structure  TTTB

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TGGGGG
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   17..20........ .30.........40.........50.........60.........70.........80.........90...
 
   1895....1900....... ..1910........ .1920.........1930.........1940...
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Query Sequence  GGAASVKQHHSSA. HNKDIALGVFD. VVVTDPSCPASVLKCAEALQLPVVS
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Template Sequence  GATPIAGRFTPGFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIA
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   94.....100.........110.........120.........130.........140....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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