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Job DescriptionQ12888
Confidence99.88%DateTue Apr 3 15:01:59 BST 2012
Rank9Aligned Residues175
% Identity19%Templatec3al3A_
PDB info PDB header:dna binding protein/protein bindingChain: A: PDB Molecule:dna topoisomerase 2-binding protein 1; PDBTitle: crystal structure of topbp1 brct7/8-bach1 peptide complex
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1772.......1780.........1790 .........1800.........1810.........1820.........1830.........1840.........1850
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Query Sequence  NKQYTESQLRAGAGYILED. FNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPA
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Template Sequence  ERIDYCHLIEKLGGLVIEKQCFDPTCT. . . . . HIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGS
Template Known Secondary structure  TT



SS

TT
S.....SS

SSTT

TTS


SGGGBTTS
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   12791280.........1290.........1300..... ....1310.........1320.........1330.........1340.........1350...
 
   1851...... ..1860.........1870.........1880.........1890.........1900........
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Query Sequence  GYSLEEQ. . . . . . . . . . . . . . . . . . . . . . RILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAH
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Template Sequence  SSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQ. . SREAGFKRLLQSGGAKVLPGHSVP. .
Template Known Secondary structure  TT

S

TTT



TTTT


T..TTTT

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GG..
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   1354.....1360.........1370.........1380.........1390.........1400..... ....1410.........1420.........
 
   19091910.........1920.........1930.........1940.........1950.........1960..
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Query Sequence  NKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQH
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Template Sequence  . . . . LFKEATHLFSDLGVN. . . IAEAAAQNVYCLRTEYIADYLMQESPPHVENY
Template Known Secondary structure  ....GTTT
S




...TT
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GGGG
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   1430.........1440.... .....1450.........1460.........1470......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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