|   |
1489 | 1490 | . | . | . | . | . | . | |
. | . | . | 1500 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
1510 | . | . | . | . | . | . | . | . | . | 1520 | . | . | . | . | . | . | . | . | . | 1530 | . | . | . | . | . | . | . | . | . | 1540 | . | . | . | . | . | . | . | . | . | 1550 | . | . | . | . | . | . | . | . | . | 1560 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | R | V | V | A | K | W | S | . |
S | N | G | Y | F | Y | S | G | K | I | T | R | D | . |
. |
. |
. |
. |
V | G | A | G | K | Y | K | L | L | F | D | D | G | Y | E | C | D | V | L | G | K | D | I | L | L | C | D | P | I | P | L | D | T | E | V | T | A | L | S | E | D | E | Y | F | S | A | G | V | V | K | G | H | R |
Query Conservation |   |
  |
|
|   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|   |
|   |   |   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|
| . |
|
|
|   |
|
|
| . | . |   |   |   |
|
|   |   |
|   |
|
|
|
|   |
Template Sequence |   |
N | R | V | L | A | F | F | K | G | Y | P | S | F | Y | Y | P | A | T | L | V | A | P | V | H | S | A | V | T | S | S | I | X | Y | K | V | Q | F | D | D | A | T | X | S | T | V | N | S | N | Q | I | K | R | F | F | L | K | . |
K | G | D | V | V | Q | S | . |
. |
T | R | L | G | K | I | K | H | T | V | V | K | T | F |
Template Known Secondary structure |   |
G |  |  |  |  |  |
|
| S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |
|
| S | S |
|
| S |
|  |  |  |  |  |  | T | T | S |
|  |  |  |  |  | T | T | S |  |  |  | S |
|
|
| . | T | T |
|  |  |  |  | . | . | T | T | S | T | T |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
364 | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | |
420 | . | . | . | . | . | . | |
|
. | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 |
  |
  |   |
1563 | . | . | . | . | . | . | 1570 | . | . | . | . | . | . | . | . | . | 1580 | . | . | . | . | . | . | . | . | . | 1590 | . | . | . | . | . | . | . | . | . | 1600 | . | . | . | . | . | . | . | . | . | 1610 | . | . | . | . | . | |
. | . | . | . | 1620 | . | . | . | . | . | . | . | . | . | 1630 | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | E | S | G | E | L | Y | Y | S | I | E | K | E | G | Q | R | K | W | Y | K | R | M | A | V | I | L | S | L | E | Q | G | N | R | L | R | E | Q | Y | G | L | G | P | Y | E | A | V | T | P | L | T | K | A | A | . |
D | I | S | L | D | N | L | V | E | G | K | R | K | R | R | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |
|
| . | . | . | . |
|   |
|
|   |   |
|
|
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|   |
|
|
|
|   |   |
|
|   |
|
|   |   |
|   |
Template Sequence |   |
R | S | T | N | E | Q | L | S | L | I | A | V | D | . |
. |
. |
. |
A | L | N | N | D | X | V | I | L | A | H | G | E | I | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | T | V | P | I | S | T | I | Y | V | A | P | V | N | I | R | R | F | Q | G | R | D |
Template Known Secondary structure |   |
|
|
| S | S |
|
|
| G | G | G |
|
| . | . | . | . | T | T |
|
|
|  |  |  |  |  |  | T | T |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  | G | G | G |  |  | B |
|  |  |  |  | T | T |
|
| S |
| S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  | . | . | . | . |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
441 | . | . | . | . | . | . | . | . | 450 | . | . | . | |
|
|
|
. | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 |
  |