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Job DescriptionQ12888
Confidence99.89%DateTue Apr 3 15:01:59 BST 2012
Rank7Aligned Residues175
% Identity20%Templatec2azmB_
PDB info PDB header:cell cycleChain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of the mdc1 brct repeat in complex with2 the histone tail of gamma-h2ax
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1771........1780.........1790.........1800.........1810.........1820.........1830.........1840.........1850
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Query Sequence  FNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPA
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Template Sequence  VVDARGERAVLALGGSLAGSAAE. . . . . . . ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTD
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TT

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T


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GGGGB


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   1900.........1910.........1920.. .......1930.........1940.........1950.........1960.........1970..
 
   1851........ 1860.........1870.........1880.........1890.........1900.........1910.........1920.....
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Query Sequence  GYSLEEQRI. . . . . LDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPS
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Template Sequence  PEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQ. PPPPQXGEIISCCGGTYLPSXPRSYK. . . . . . . PQRVVITCPQ
Template Known Secondary structure  TT



TTTT

TT
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TT
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S

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TT
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   1973......1980.........1990.........2000........ .2010.........2020.........2030.... .....2040....
 
   1926...1930.........1940.........1950.........1960..
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Query Sequence  CPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQH
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Template Sequence  DFP. HCSIPLRVGLPLLSPEFLLTGVLKQ. EAKPEAF
Template Known Secondary structure  TGG.G
T


TT.


GGG
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   2045.. ..2050.........2060.........2070.. .......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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