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Job DescriptionQ12888
Confidence99.77%DateTue Apr 3 15:01:59 BST 2012
Rank15Aligned Residues161
% Identity12%Templatec2xnkA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:dna topoisomerase 2-binding protein 1; PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1772.......1780.........1790.........1800.........1810.........1820.........1830.........1840.........1850.
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Query Sequence  NKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAG
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Template Sequence  KREEVHKYVQXXGGRVYRDLNVSV. . . . . . THLIAGE. VGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDINX
Template Known Secondary structure  TT

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G
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   120.........130.........140... ......150 .........160.........170.........180.........190..
 
   1852.......1860.........1870.........1880.........1890.........1900.........1910.........1920.........1930.
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Query Sequence  YSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVL
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Template Sequence  EDF. . . . . . . . . . KCPIFLGCIICVTGLCG. LDRKEVQQLTVKHGGQYXGQ. . . . . . . . . LKXNECTHLIVQ. EPKGQKY
Template Known Secondary structure  GGG..........B

TTTT

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   193.. ....200.........210.. .......220.........230.. .......240.... .....250.
 
   1932.......1940.........1950.........1960
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Query Sequence  KCAEALQLPVVSQEWVIQCLIVGERIGFK
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Template Sequence  ECAKRWNVHCVTTQWFFDSIEKGFCQDES
Template Known Secondary structure  TT

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GG
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   252.......260.........270.........280
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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