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Job DescriptionQ12888
Confidence57.31%DateTue Apr 3 15:01:59 BST 2012
Rank157Aligned Residues91
% Identity23%Templatec3bbnB_
PDB info PDB header:ribosomeChain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
Resolution9.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1847..1850.........1860.........1870... ......1880.........1890....
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Query Sequence  LLPAGYSLEEQRILDWQPRENPFQNLK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VLLVSDQQQNFLELWSEILMT
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Template Sequence  MMEAGVHF. GHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKN. KAADSVARAAIR
Template Known Secondary structure  TSSSS.


SS


GGGGGGTT
TSTTT




T.TT
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   13......20 .........30.........40.........50.........60.........70........ .80.........90
 
   1895....1900.........1910...... .. .
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Query Sequence  GGAASVKQHHSSAHNKDIALGV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FD. V
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Template Sequence  ARCHYVNKKWLG. . . . . GMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIV
Template Known Secondary structure  T


SS

S.....
SSS
STTSTTTTTS
TTSTTSTTS

S

S
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   91........100.. .......110.........120.........130.........140.........150.........160.....
 
   1920.........1930.........1940....
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Query Sequence  VVTDPSCPASVLKCAEALQLPVVSQ
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Template Sequence  IIVDQQEEYTALRECITLGIPTICL
Template Known Secondary structure  S
TTTTTTT


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   166...170.........180.........190
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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