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Job DescriptionQ12888
Confidence99.85%DateTue Apr 3 15:01:59 BST 2012
Rank11Aligned Residues180
% Identity13%Templatec2r1zB_
PDB info PDB header:antitumor proteinChain: B: PDB Molecule:brca1-associated ring domain protein 1; PDBTitle: crystal structure of the bard1 brct repeat
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1772.......1780.........1790.........1800...... ...1810.........1820.........1830.........1840.........
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Query Sequence  NKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIA. . DQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLP
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Template Sequence  QQKMLSELAVILKAKKYTEFDS. . . . . . TVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIP
Template Known Secondary structure  TT
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T......T

SSSS


STT
TTS


GGGGB
T
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   581........590.........600.. .......610.........620.........630.........640.........650....
 
   1850.........1860.........1870.........1880.........1890.........1900......... 1910.....
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Query Sequence  AGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHN. . . . . . . . . . . . . . KDIALG
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Template Sequence  EGPRR. . SRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRF
Template Known Secondary structure  T..TT


TTTT

S

SSS
TT

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TT





TTS
TTSGGGT
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   655.... 660.........670.........680.........690.........700.........710.........720.........730..
 
   1916...1920.........1930.........1940.........1950.........1960
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Query Sequence  VFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFK
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Template Sequence  CTQYIIYEDLCNYHP. ERVRQGKVWKAPSSWFIDCVMSFELLPLD
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   733......740....... ..750.........760.........770......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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