Job Description Q12888 Confidence 64.62% Date Tue Apr 3 15:01:59 BST 2012
Rank 140 Aligned Residues 94
% Identity 22% Template c2zkqb_
PDB info
PDB header: ribosomal protein/rnaChain: B: PDB Molecule: rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
Resolution 8.70 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
1847 . . 1850 . . . . . . . . . 1860 . . . . . . . . . 1870 . . .
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Predicted Secondary structure  
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Query Sequence  
L L P A G Y S L E E Q R I L D W Q P R E N P F Q N L K .
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V L L V S D Q Q Q N F L E L W S E I L M T
Query Conservation  
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Alig confidence  
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Template Conservation  
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Template Sequence  
F L A A G T H L G G T N .
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L D F Q M E Q Y I Y K R K S D G I Y I I N L K R T W E K L L L A A R A I V A I E N P A D V S V I S S R N T G Q R A V L K F A A A T
Template Known Secondary structure  
T T T B S . . . T G G G G G T T S S S G G G S
Template Predicted Secondary structure  
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Template SS confidence  
   
17 . . 20 . . . . . . . .
. 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . .
 
   
1895 . . . . 1900 . . . . . . .
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Predicted Secondary structure  
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Query SS confidence  
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Query Sequence  
G G A A S V K Q H H S S A .
H N K D I A L G V F D .
V V V T D P S C P A S V L K C A E A L Q L P V V S
Query Conservation  
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Alig confidence  
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Template Conservation  
                                                       
Template Sequence  
G A T P I A G R F T P G F T N Q I Q A A F R E P R L L V V T D P R A D H Q P L T E A S Y V N L P T I A
Template Known Secondary structure  
S S T T S S S S T T T T T
Template Predicted Secondary structure  
Template SS confidence  
   
94 . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140 . . . .
 
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]