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Job DescriptionQ12888
Confidence99.76%DateTue Apr 3 15:01:59 BST 2012
Rank16Aligned Residues189
% Identity18%Templatec3ii6Y_
PDB info PDB header:ligase/dna binding proteinChain: Y: PDB Molecule:dna ligase 4; PDBTitle: structure of human xrcc4 in complex with the tandem brct2 domains of dna ligaseiv.
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1727..1730.........1740.........1750.........1760.........1770.........1780.........1790.........1800......
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Query Sequence  TLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIA
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Template Sequence  NIFEDVEFCVMSGTDSQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . PKPDLENRIAEFGGYIVQNPGP. . . . . . . DTYCVI
Template Known Secondary structure 
TTTT




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TT

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   657..660.........670... ......680.........690..... ....700.
 
   1807..1810.........1820.........1830.........1840........
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Query Sequence  DQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGI
Template Known Secondary structure 
SS

TTTTTS

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GGG

B
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S
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   702.......710.........720.........730.........740.........750.........760.........770.........780.
 
   18491850.........1860.........1870...... ...1880.........1890.........1900.....
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Query Sequence  . . . . . . . . . . . PAGYSLEEQRILDWQPRENPFQNLKVLL. . . . . . . . . . . . VSDQQQNFLELWSEILMTGGAASVKQHHS
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Template Sequence  KNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTR. . . LAIKALELRFHGAKVVSC. . .
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SSGGGSGGGTTTT


BSSTT
TT
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   782.......790.........800.........810.........820.........830....... ..840.........850.....
 
   1906...1910.........1920....... ..1930.........1940.........1950.........1960..
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Query Sequence  SAHNKDIALGVFDVVVTDPSCP. . . ASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQH
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Template Sequence  . . . . . . LAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQY
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STT
S
S

TT
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   856...860.........870.........880.........890.........900.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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