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Job Description | Q12888 | Confidence | 97.20% | Date | Tue Apr 3 15:01:59 BST 2012 |
Rank | 49 | Aligned Residues | 90 |
% Identity | 22% | Template | c2l42A_ |
PDB info |
PDB header:protein binding | Chain: A: PDB Molecule:dna-binding protein rap1; |
PDBTitle: the solution structure of rap1 brct domain from saccharomyces2 cerevisiae
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Resolution | UNK |
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1723 | . | . | . | . | . | . | 1730 | . | . | . | . | . | . | . | . | . | 1740 | . | . | . | . | . | . | . | . | . | 1750 | . | . | . | . | . | . | . | . | . | 1760 | . | . | . | . | . | . | . | . | . | 1770 | . | . | . | . | . | . | . | . | . | 1780 | . | . | . | . | . | . | . | . | . | 1790 | . | . | . | . | . | . | . | . | . | 1800 | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
P | L | N | K | T | L | F | L | G | Y | A | F | L | L | T | M | A | T | T | S | D | K | L | A | S | R | S | K | L | P | D | G | P | T | G | S | S | E | E | E | E | E | F | L | E | I | P | P | F | N | K | Q | Y | T | E | S | Q | L | R | A | G | A | G | Y | I | L | E | D | F | N | E | A | Q | C | N | T | A | Y | Q | C |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
Q | V | S | G | P | P | L | S | N | M | K | F | Y | L | N | R | D | A | D | A | H | D | S | L | . |
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N | D | I | D | Q | L | A | R | L | I | R | A | N | G | G | E | V | L | D | S | K | P | R | E | S | K | E | N | V | . |
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Template Known Secondary structure |   |
S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
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. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
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1803 | . | . | . | . | . | . | 1810 | . | . | . | . | . | . | . | . | . | 1820 | . | . | . | . | . | . | . | . | . | 1830 | . | . | . | . | . | . | . | . | . | 1840 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
L | L | I | A | D | Q | H | C | R | T | R | K | Y | F | L | C | L | A | S | G | I | P | C | V | S | H | V | W | V | H | D | S | C | H | A | N | Q | L | Q | N | Y | R | N | Y | L | L | P |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
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F | I | V | S | P | Y | N | H | T | . |
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N | L | P | T | V | T | P | T | Y | I | K | A | C | C | Q | S | N | S | L | L | N | M | E | N | Y | L | V | P |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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58 | . | 60 | . | . | . | . | . | . | |
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. | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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