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Job Description | Q12888 | Confidence | 79.06% | Date | Tue Apr 3 15:01:59 BST 2012 |
Rank | 109 | Aligned Residues | 81 |
% Identity | 21% | Template | c3dzdA_ |
PDB info |
PDB header:transcription regulator | Chain: A: PDB Molecule:transcriptional regulator (ntrc family); |
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
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Resolution | 2.40 Å |
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1873 | . | . | . | . | . | . | 1880 | . | . | . | . | . | . | . | . | . | 1890 | . | . | . | . | . | . | . | . | . | 1900 | . | . | . | . | . | . | . | . | . | 1910 | . | . | . | . | . | . | . | . | . | 1920 | . | . | . | . | . | . | . | . | . | |
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Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
K | V | L | L | V | S | D | Q | Q | Q | N | F | L | E | L | W | S | E | I | L | M | T | G | G | A | A | S | V | K | Q | H | H | S | S | A | H | N | K | D | I | A | L | G | V | F | D | V | V | V | T | D | P | S | C | P | A | S | . |
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Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
R | V | L | V | V | D | D | E | E | . |
S | I | T | S | S | L | S | A | I | L | E | E | E | G | Y | H | P | D | T | A | K | T | L | R | E | A | E | K | K | I | K | E | L | F | F | P | V | I | V | L | D | V | W | X | P | D | G | D | G | V | N | F | I | D | F | I | K | E | N | S | P | D | S | V | V | I | V | I | T | G |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
3 | . | . | . | . | . | . | 10 | . | |
. | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
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1945 | . | . | . | . | 1950 | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
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E | W | V | I | Q | C | L | I | V | G |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
H | G | S | V | D | T | A | V | K | A | I | K | K | G |
Template Known Secondary structure |   |
S | S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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