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Job DescriptionQ12888
Confidence90.14%DateTue Apr 3 15:01:59 BST 2012
Rank69Aligned Residues95
% Identity23%Templatec3izbA_
PDB info PDB header:ribosomeChain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
ResolutionNULL Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1847..1850.........1860.........1870... ......1880.........1890....
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Query Sequence  LLPAGYSLEEQRILDWQPRENPFQNLK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VLLVSDQQQNFLELWSEILMT
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Template Sequence  LLAANTHLGARN. . . VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHT
Template Known Secondary structure  TTSS

S
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TTTTTS

B

SSS

B



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STTT
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   17..20........ .30.........40.........50.........60.........70.........80.........90...
 
   1895....1900....... ..1910........ .1920.........1930.........1940....
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Query Sequence  GGAASVKQHHSSA. . HNKDIALGVFD. VVVTDPSCPASVLKCAEALQLPVVSQ
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Template Sequence  GATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIAL
Template Known Secondary structure  T

SS

SSTTTSTTSS
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TTTTT


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   94.....100.........110.........120.........130.........140......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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