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Job DescriptionQ12888
Confidence78.31%DateTue Apr 3 15:01:59 BST 2012
Rank111Aligned Residues95
% Identity17%Templatec2xznB_
PDB info PDB header:ribosomeChain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
Resolution3.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1847..1850.........1860.........1870... ......1880.........1890....
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Query Sequence  LLPAGYSLEEQRILDWQPRENPFQNLK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VLLVSDQQQNFLELWSEILMT
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Template Sequence  LLASNCHQATIN. . . LNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYT
Template Known Secondary structure  TTTT
S
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GGGTTT
SSS


SSGGG

S
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   13......20.... .....30.........40.........50.........60.........70.........80.........
 
   1895....1900....... ..1910........ .1920.........1930.........1940....
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Query Sequence  GGAASVKQHHSSA. . . HNKDIALGVFD. VVVTDPSCPASVLKCAEALQLPVVSQ
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Template Sequence  HCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIAL
Template Known Secondary structure  T
B



SS

TTTTT
TT
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SS
TTTTTTTT


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   90.........100.........110.........120.........130.........140...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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