 |
Job Description | Q12888 | Confidence | 22.85% | Date | Tue Apr 3 15:01:59 BST 2012 |
Rank | 259 | Aligned Residues | 76 |
% Identity | 12% | Template | c3d64A_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:adenosylhomocysteinase; |
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei
|
Resolution | 2.30 Å |
|
 |
  |   |
1867 | . | . | 1870 | . | . | . | . | . | . | . | . | . | 1880 | . | . | . | . | . | . | . | . | . | 1890 | . | . | . | . | . | . | . | . | . | 1900 | . | . | . | . | . | . | . | . | . | 1910 | . | . | . | . | . | . | . | . | . | 1920 | . | . | . | . | . | . | . | . | . | 1930 | . | . | . | . | . | . | . | . | . | 1940 | . | . | . | . | |
|
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
Query Sequence |   |
N | P | F | Q | N | L | K | V | L | L | V | S | D | Q | Q | Q | N | F | L | E | L | W | S | E | I | L | M | T | G | G | A | A | S | V | K | Q | H | H | S | S | A | H | N | K | D | I | A | L | G | V | F | D | V | V | V | T | D | P | S | C | P | A | S | V | L | K | C | A | E | A | L | Q | L | P | V | V | S | Q | . |
. |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |
|
|   |
|   |   |
|   |   |   |   |
|   |   | . |   |   |
|
|   |
|   |   |   |
|   |
|   |
|
|   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |
|
|
|
| . | . | . | . |   |
|
|
|   |
|   |   |   |
|
|   |
|   |
|   |   |   |
Template Sequence |   |
Q | P | L | K | G | A | R | I | A | G | S | L | H | M | T | . |
I | Q | T | G | V | L | I | E | T | L | K | A | L | G | A | D | V | R | W | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | S | C | N | I | F | S | T | Q | D | . |
. |
. |
. |
H | A | A | A | A | I | V | E | A | G | T | P | V | F | A | F | K | G |
Template Known Secondary structure |   |
| T | T | T | T |
|  |  |  |  |  | S |
|
| S | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
| S | S | S | S |
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |  | T | T |
|
|  |  |
|
| T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | |
. | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 90 | . | . | . | |
|
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
  |
  |   |
|
|
|
|
|
|
|
1945 | . | . | . | . | 1950 | . | . | . | . | . | . | . | . | . | 1960 |
Predicted Secondary structure |   |
. | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
E | W | V | I | Q | C | L | I | V | G | E | R | I | G | F | K |
Query Conservation |   |
. | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
Template Sequence |   |
E | S | L | D | E | Y | W | E | F | S | H | R | I | F | E | W | P | N | G | E | F | A | N |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| S | T | T |
|
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
112 | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|