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Job Description | Q12888 | Confidence | 98.49% | Date | Tue Apr 3 15:01:59 BST 2012 |
Rank | 39 | Aligned Residues | 88 |
% Identity | 11% | Template | c2jw5A_ |
PDB info |
PDB header:protein binding | Chain: A: PDB Molecule:dna polymerase lambda; |
PDBTitle: polymerase lambda brct domain
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Resolution | UNK |
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1728 | . | 1730 | . | . | . | . | . | . | . | . | . | 1740 | . | . | . | . | . | . | . | . | . | 1750 | . | . | . | . | . | . | . | . | . | 1760 | . | . | . | . | . | . | . | . | . | 1770 | . | . | . | . | . | . | . | . | . | 1780 | . | . | . | . | . | . | . | . | . | 1790 | . | . | . | . | . | . | . | . | . | 1800 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
L | F | L | G | Y | A | F | L | L | T | M | A | T | T | S | D | K | L | A | S | R | S | K | L | P | D | G | P | T | G | S | S | E | E | E | E | E | F | L | E | I | P | P | F | N | K | Q | Y | T | E | S | Q | L | R | A | G | A | G | Y | I | L | E | D | F | N | E | A | Q | C | N | T | A | Y | Q | C | L | L | I | A | D |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
W | L | S | S | L | R | A | H | V | V | R | T | G | I | G | R | . |
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A | R | A | E | L | F | E | K | Q | I | V | Q | H | G | G | Q | L | C | P | A | Q | G | P | G | V | . |
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T | H | I | V | V | D |
Template Known Secondary structure |   |
| G | G | G | S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
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. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | |
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1808 | . | 1810 | . | . | . | . | . | . | . | . | . | 1820 | . | |
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. | . | . | . | . | . | . | . | 1830 | . | . | . | . | . | . | . | . | . | 1840 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
Q | H | C | R | T | R | K | Y | F | L | C | L | A | S | . |
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G | I | P | C | V | S | H | V | W | V | H | D | S | C | H | A | N | Q | L | Q | N | Y | R | N | Y | L | L |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
E | G | M | D | Y | E | R | A | L | R | L | L | R | L | P | Q | L | P | P | G | A | Q | L | V | K | S | A | W | L | S | L | C | L | Q | E | R | R | L | V | D | V | A | G | F | S | I |
Template Known Secondary structure |   |
S | S | S |
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| G | G | G | T | B |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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