Job Description P51451 Confidence 100.00% Date Wed May 9 17:30:27 BST 2012 Rank 228 Aligned Residues 234 % Identity 26% Template c4aguC_ PDB info PDB header:transferase Chain: C: PDB Molecule:cyclin-dependent kinase-like 1; PDBTitle: crystal structure of the human cdkl1 kinase domain Resolution 2.40 Å

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		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.
Predicted Secondary structure																									.																		.	.	.																														.
Query SS confidence																									.																		.	.	.																														.
Query Sequence		Q	S	L	R	L	V	R	K	L	G	S	G	Q	F	G	E	V	W	M	G	Y	Y	K	.	N	N	M	K	V	A	I	K	T	L	K	E	G	T	M	S	P	.	.	.	E	A	F	L	G	E	A	N	V	M	K	A	L	Q	H	E	R	L	V	R	L	Y	A	V	V	T	K	E	P	.	I	Y	I	V	T	E
Query Conservation																									.																		.	.	.																														.
Alig confidence																									.																		.	.	.																														.
Template Conservation
Template Sequence		E	K	Y	E	K	I	G	K	I	G	E	G	S	Y	G	V	V	F	K	C	R	N	R	D	T	G	Q	I	V	A	I	K	K	F	L	E	S	E	D	D	P	V	I	K	K	I	A	L	R	E	I	R	M	L	K	Q	L	K	H	P	N	L	V	N	L	L	E	V	F	R	R	K	R	R	L	H	L	V	F	E
Template Known Secondary structure														S	S									T	T	T													S	S																					T	T	B										T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	A	R	G	C	L	L	D	F	L	K	T	D	E	G	S	R	L	S	L	P	R	L	I	D	M	S	A	Q	I	A	E	G	M	A	Y	I	E	R	M	N	S	I	H	R	D	L	R	A	A	N	I	L	V	S	E	A	L	C	C	K	I	A	D	F	G	L	A	R	I	I	D	S	E	Y	T	A	Q	E
Query Conservation
Alig confidence																		.	.																																																							.	.	.	.	.	.	.	.
Template Conservation																		.	.																																																							.	.	.	.	.	.	.	.
Template Sequence		Y	C	D	H	T	V	L	H	E	L	D	R	Y	Q	R	G	.	.	V	P	E	H	L	V	K	S	I	T	W	Q	T	L	Q	A	V	N	F	C	H	K	H	N	C	I	H	R	D	V	K	P	E	N	I	L	I	T	K	H	S	V	I	K	L	C	D	F	G	F	A	R	L	L	.	.	.	.	.	.	.	.
Template Known Secondary structure				S										T	S	S		.	.																							T	T							S	G	G	G					T	T	S								T	T					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.																																																							.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	K	F	P	I	K	W	T	A	P	E	A	I	H	F	G	V	.	F	T	I	K	A	D	V	W	S	F	G	V	L	L	M	E	V	V	T	Y	G	R	V	P	Y	P	G	M	S	N	P	E	V	I	R	N	L	E	R	G	Y	R	M	P	R	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.															.																				.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																			.
Template Sequence		.	.	.	.	T	R	W	Y	R	S	P	E	L	L	V	G	D	T	Q	Y	G	P	P	V	D	V	W	A	I	G	C	V	F	A	E	L	L	S	.	G	V	P	L	W	P	G	K	S	D	V	D	Q	L	Y	L	I	R	K	T	L	G	D	L	I	P	R	H	Q	Q	V	F	S	T	N	Q	Y	F	S	G	V
Template Known Secondary structure		.	.	.	.		G	G	G							T	T		S				T																	.	S	S		S				S	S														S											T		G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.																																			.
Template SS confidence
						164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
																		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	C	P	P	E	L	Y	R	G	V	I	A	E	C	W	R	S	R	P	E	E	R	P	T	F	E	F	L	Q	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																								.
Template Sequence		K	I	P	D	P	E	D	M	E	P	L	E	L	K	F	P	N	I	S	Y	P	A	.	L	G	L	L	K	G	C	L	H	M	D	P	T	E	R	L	T	C	E	Q	L	L	H
Template Known Secondary structure							S	S									T	T	S					.										S	S	T	T	T	S							T	T
Template Predicted Secondary structure																								.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions