Job Description P51451 Confidence 100.00% Date Wed May 9 17:30:27 BST 2012 Rank 250 Aligned Residues 234 % Identity 28% Template c4aaaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cyclin-dependent kinase-like 2; PDBTitle: crystal structure of the human cdkl2 kinase domain Resolution 1.53 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.
Predicted Secondary structure																										.																	.	.	.																														.
Query SS confidence																										.																	.	.	.																														.
Query Sequence		Q	S	L	R	L	V	R	K	L	G	S	G	Q	F	G	E	V	W	M	G	Y	Y	K	N	.	N	M	K	V	A	I	K	T	L	K	E	G	T	M	S	P	.	.	.	E	A	F	L	G	E	A	N	V	M	K	A	L	Q	H	E	R	L	V	R	L	Y	A	V	V	T	K	E	P	.	I	Y	I	V	T	E
Query Conservation																										.																	.	.	.																														.
Alig confidence																										.																	.	.	.																														.
Template Conservation
Template Sequence		E	K	Y	E	N	L	G	L	V	G	E	G	S	Y	G	M	V	M	K	C	R	N	K	D	T	G	R	I	V	A	I	K	K	F	L	E	S	D	D	D	K	M	V	K	K	I	A	M	R	E	I	K	L	L	K	Q	L	R	H	E	N	L	V	N	L	L	E	V	C	K	K	K	K	R	W	Y	L	V	F	E
Template Known Secondary structure		G	G							G	G	G	G	T	T	S	S							T	T	T											S		S	S																					T	T	B										T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	A	R	G	C	L	L	D	F	L	K	T	D	E	G	S	R	L	S	L	P	R	L	I	D	M	S	A	Q	I	A	E	G	M	A	Y	I	E	R	M	N	S	I	H	R	D	L	R	A	A	N	I	L	V	S	E	A	L	C	C	K	I	A	D	F	G	L	A	R	I	I	D	S	E	Y	T	A	Q	E
Query Conservation
Alig confidence																	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	D	H	T	I	L	D	D	L	E	L	F	P	N	.	.	G	L	D	Y	Q	V	V	Q	K	Y	L	F	Q	I	I	N	G	I	G	F	C	H	S	H	N	I	I	H	R	D	I	K	P	E	N	I	L	V	S	Q	S	G	V	V	K	L	C	D	F	G	.	.	.	.	.	.	.	.	.	.	.	.	F
Template Known Secondary structure				S										S	T	T	.	.																								T	T								G	G	G					T	T	S								T	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.													.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	K	F	P	I	K	W	T	A	P	E	A	I	H	F	.	G	V	F	T	I	K	A	D	V	W	S	F	G	V	L	L	M	E	V	V	T	Y	G	R	V	P	Y	P	G	M	S	N	P	E	V	I	R	N	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		A	E	V	A	T	R	W	Y	R	A	P	E	L	L	V	G	D	V	K	Y	G	K	A	V	D	V	W	A	I	G	C	L	V	T	E	M	F	M	.	G	E	P	L	F	P	G	D	S	D	I	D	Q	L	Y	H	I	M	M	C	L	G	N	L	I	P	R	H	Q	E	L	F	N	K	N	P	V	F	A	G	V
Template Known Secondary structure								T	T							T	T		T	T			T																	.	S	S		S				S	S														S													G	G	G	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
									450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	R	G	Y	R	M	P	R	P	D	T	C	P	P	E	L	Y	R	G	V	I	A	E	C	W	R	S	R	P	E	E	R	P	T	F	E	F	L	Q	S
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																.
Template Conservation																								.
Template Sequence		R	L	P	E	I	K	E	R	E	P	L	E	R	R	Y	P	K	L	S	E	V	V	.	I	D	L	A	K	K	C	L	H	I	D	P	D	K	R	P	F	C	A	E	L	L	H
Template Known Secondary structure							S	S								S	T	T	S					.								T		S	S	G	G	G	S			G	G	G	G	G	G
Template Predicted Secondary structure																								.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions