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Job DescriptionP51451
Confidence100.00%DateWed May 9 17:30:27 BST 2012
Rank36Aligned Residues246
% Identity24%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   238.240.........250.........260.........270.........280 .........290.........300....... ..310...
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Query Sequence  RQSLRLVRKLGSGQFGEVWMGYYKNNMKVAIKTLKEGTMSPEA. . . FLGEANVMKALQHERLVRLYAVVTKEP. IYIVTE
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVL. AGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD
Template Known Secondary structure 

TT.TTS
S


BTTB


SS
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   10.........20.........30.. .......40.........50.........60.........70.........80........
 
   314.....320.........330.........340.........350.........360.........370... ......380.........390
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Query Sequence  YMARGCLLDFLKTDEGSRLSLPRLIDMSAQIAEGMAYIERMNSIHRDLRAANILVSEALC. . . CKIADFGLARIIDSEYT
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Template Sequence  LVTGGELFEDIVARE. . YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ
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B

B
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SSTTSBSSTT




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B


TT

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   91........100..... ....110.........120.........130.........140.........150.........160........
 
   391........400.........410.........420.........430.........440.........450... ......460.......
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Query Sequence  AQEGAKFPIKWTAPEAIHFGVFTIKADVWSFGVLLMEVVTYGRVPYPGMSNPEVIRNLERGYR. . . MPRPDTCPPELYRG
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Template Sequence  AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEA. KD
Template Known Secondary structure  B


S
S
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   169170.........180.........190.........200........ .210.........220.........230.........240.... ..
 
   468.470.........480........
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Query Sequence  VIAECWRSRPEERPTFEFLQS
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Template Sequence  LINKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   247..250.........260.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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