Job Description P51451 Confidence 100.00% Date Wed May 9 17:30:27 BST 2012 Rank 18 Aligned Residues 273 % Identity 38% Template c3g0eA_ PDB info PDB header:transferase Chain: A: PDB Molecule:mast/stem cell growth factor receptor; PDBTitle: kit kinase domain in complex with sunitinib Resolution 1.60 Å

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		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.																			.	.														.
Query SS confidence																																							.	.	.	.	.	.																			.	.														.
Query Sequence		A	P	Q	N	P	W	A	Q	D	E	W	E	I	P	R	Q	S	L	R	L	V	R	K	L	G	S	G	Q	F	G	E	V	W	M	G	Y	Y	.	.	.	.	.	.	K	N	N	M	K	V	A	I	K	T	L	K	E	G	T	M	S	P	.	.	E	A	F	L	G	E	A	N	V	M	K	A	L	.	Q	H	E
Query Conservation																																							.	.	.	.	.	.																			.	.														.
Alig confidence																																							.	.	.	.	.	.																			.	.														.
Template Conservation
Template Sequence		D	P	T	Q	L	P	Y	D	H	K	W	E	F	P	R	N	R	L	S	F	G	K	T	L	G	A	G	A	F	G	K	V	V	E	A	T	A	Y	G	L	I	K	S	D	A	A	M	T	V	A	V	K	M	L	K	P	S	A	H	L	T	E	R	E	A	L	M	S	E	L	K	V	L	S	Y	L	G	N	H	M
Template Known Secondary structure			G	G	G	S				G	G	G	B			G	G	G											S	S										S	S	S	S	T	T												T	T																							T
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		295	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.																	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure													.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	V	R	L	Y	A	V	V	T	K	.	E	P	I	Y	I	V	T	E	Y	M	A	R	G	C	L	L	D	F	L	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	S	R	L	S	L	P	R	L	I	D	M	S	A	Q	I	A	E	G	M	A	Y	I	E	R	M	N	S	I
Query Conservation													.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	V	N	L	L	G	A	C	T	I	G	G	P	T	L	V	I	T	E	Y	C	C	Y	G	D	L	L	N	F	L	R	R	K	R	D	S	F	I	C	S	K	T	S	P	A	I	M	E	D	D	E	L	A	L	D	L	E	D	L	L	S	F	S	Y	Q	V	A	K	G	M	A	F	L	A	S	K	N	C	I
Template Known Secondary structure		T	B									S	S	S	S									T	T		B									G	G	G	G	S		S	S	S					B	T	T	B																										T	T
Template Predicted Secondary structure
Template SS confidence
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		H	R	D	L	R	A	A	N	I	L	V	S	E	A	L	C	C	K	I	A	D	F	G	L	A	R	I	I	D	S	E	Y	.	.	T	A	Q	E	G	A	K	F	P	I	K	W	T	A	P	E	A	I	H	F	G	V	F	T	I	K	A	D	V	W	S	F	G	V	L	L	M	E	V	V	T	Y	G	R	V	P
Query Conservation																																		.	.
Alig confidence																																		.	.
Template Conservation
Template Sequence		H	R	D	L	A	A	R	N	I	L	L	T	H	G	R	I	T	K	I	C	D	F	G	L	A	R	D	I	K	N	D	S	N	Y	V	V	K	G	N	A	R	L	P	V	K	W	M	A	P	E	S	I	F	N	C	V	Y	T	F	E	S	D	V	W	S	Y	G	I	F	L	W	E	L	F	S	L	G	S	S	P
Template Known Secondary structure			S			S	G	G	G					T	T	T								G	G	G			G	G	G		T	T	S				T	T					G	G	G	S								T																				T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		Y	P	G	M	S	N	P	E	V	I	R	N	L	.	E	R	G	Y	R	M	P	R	P	D	T	C	P	P	E	L	Y	R	G	V	I	A	E	C	W	R	S	R	P	E	E	R	P	T	F	E	F	L	Q	S	V	L	E	D	F	Y	T	A	T
Query Conservation															.
Alig confidence															.																	.
Template Conservation																																.
Template Sequence		Y	P	G	M	P	V	D	S	K	F	Y	K	M	I	K	E	G	F	R	M	L	S	P	E	H	A	P	A	E	M	.	Y	D	I	M	K	T	C	W	D	A	D	P	L	K	R	P	T	F	K	Q	I	V	Q	L	I	E	K	Q	I	S	E	S
Template Known Secondary structure		S	T	T				S									T	T							T	T						.								T		S	S	G	G	G	S
Template Predicted Secondary structure																																.
Template SS confidence
		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.		900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions