Job Description A0MZ66 Confidence 12.19% Date Sat Jun 16 10:26:01 BST 2012 Rank 55 Aligned Residues 247 % Identity 10% Template c3tnfB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:lida; PDBTitle: lida from legionella in complex with active rab8a Resolution 2.50 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	N	Q	K	T	K	E	K	C	D	K	I	R	Q	E	R	D	E	A	V	K	K	L	E	E	F	Q	K	I	S	H	M	V	I	E	E	V	N	F	M	Q	N	H	L	E	I	E	K	T	C	R	E	S	A	E	A	L	A	T	K	L	N	K	E	N	K	T	L	K	R	I	S	M	L	Y	M	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	Y	E	Q	A	I	K	R	A	Q	E	N	I	K	K	G	E	E	L	E	K	K	L	D	K	L	E	R	Q	G	K	D	L	E	D	K	Y	K	T	Y	E	E	N	L	E	G	F	E	K	L	L	T	D	S	E	E	L	S	L	S	E	I	N	E	K	M	E	A	F	S	K	D	S	E	K	L	T	Q	L
Template Known Secondary structure													T	T	T	T	T	T	T						T	T																						T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	D	V	I	T	E	E	I	N	I	D	D	E	D	S	T	T	D	T	D	G	A	A	E	T	C	V	S	V	Q	C	Q	K	Q	I	K	E	L	R	D	Q	I	V	S	V	Q	E	E	K	K	I	L	A	I	E	L	E	N	L	K	S	K	L	V	E	V	I	E	E	V	N	K	V	K	Q	E	K	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	K	H	K	G	D	E	K	T	V	Q	S	L	Q	R	E	H	H	D	I	K	A	K	L	A	N	L	Q	V	L	H	D	A	H	T	G	K	K	S	Y	V	N	E	K	G	N	P	V	S	S	L	K	D	A	H	L	A	I	N	K	D	Q	E	V	V	E	H	E	G	Q	F	Y	L	L	Q	K	G	Q	W
Template Known Secondary structure			T	T	S	T	T																														S		S						T	T	S	S			S	S	G	G	G		S					T	T						S	T	T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	S	E	V	L	E	Q	R	K	V	L	E	K	C	N	R	V	S	M	L	A	V	E	E	Y	E	E	M	Q	V	N	L	E	L	E	K	D	L	R	K	K	A	E	S	F	A	Q	E	M	F	I	E	Q	N	K	L	K	R	Q	S	H	L	L	L	Q	S	S	I	P	D	Q	Q	L	L	K	A	L	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	I	K	N	N	P	A	A	L	E	K	A	Q	K	D	Y	S	Q	S	K	H	D	L	A	T	I	K	M	E	A	L	I	H	K	L	S	L	E	M	E	K	Q	L	E	T	I	N	N	L	I	M	S	T	D	P	K	E	N	E	E	A	T	K	L	L	H	K	H	N	G	L	N	L	K	L	A	N	L	Q
Template Known Secondary structure		T	T	T	T	T																																																	S
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		269	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	K	L	T	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	M	L	A	V	H	R
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		443	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions