Job Description A0MZ66 Confidence 25.13% Date Sat Jun 16 10:26:01 BST 2012 Rank 39 Aligned Residues 338 % Identity 7% Template c2oexB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain Resolution 2.58 Å

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		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	A	L	D	E	N	A	K	L	T	Q	Q	L	E	E	E	R	I	Q	H	Q	Q	K	V	K	E	L	E	E	Q	L	E	N	E	T	L	H	K	E	I	H	N	L	K	Q	Q	L	E	L	L	E	E	D	K	K	E	L	E	L	K	Y	Q	N	S	E	E	K	A	R	N	L	K	H	S	V	D	E	L	Q
Query Conservation
Alig confidence																																																																		.
Template Conservation																																																																		.
Template Sequence		V	Q	Q	S	L	A	A	Y	N	Q	R	K	A	D	L	V	N	R	S	I	A	Q	X	R	E	A	T	T	L	A	N	G	V	L	A	S	L	N	L	P	A	A	I	E	D	V	S	G	D	T	V	P	Q	S	I	L	T	K	S	R	S	V	I	E	.	Q	G	G	I	Q	T	V	D	Q	L	I	K	E	L	P
Template Known Secondary structure																																						T	T	T	T	G	G	G	G			S	T	T	S															.	T	T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	V	N	Q	S	E	N	S	V	P	P	P	P	P	P	P	P	P	L	P	P	P	P	P	N	P	I	R	S	L	M	S	M	I	R	K	R	S	H	P	S	G	S	G	A	K	K	E	K	A	T	Q	P	E	T	T	E	E	V	T	D	L	K	R	Q	A	V	E	E	M	M	D	R	I	K	K	G	V	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	L	Q	R	N	R	E	I	L	D	E	S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V
Template Known Secondary structure																																S	S	T	T			S							T																														T	T
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	V	N	Q	T	A	R	P	K	T	K	P	E	S	S	K	G	C	E	S	A	V	D	E	L	K	G	I	L	G	T	L	N	K	S	T	S	S	R	S	L	K	S	L	D	P	E	N	S	E	T	E	L	E	R	I	L	R	R	R	K	V	T	A	E	A	D	S	S	S	P	T	G	I	L	A	T	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	C	K	P	E	P	E	L	N	A	A	I	P	S	A	N	P	A	K	T	X	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	X	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S	V
Template Known Secondary structure				T	S							T	T	S							T	T	T	T	T																														T																S	S	S
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	K	S	M	P	V	L	G	S	V	S	S	V	T	K	T	A	L	N	K	K	T	L	E	A	E	F	N	S	P	S	P	P	T	P	E	P	G	E	G	P	R	K	L	E	G	C	T	S	S	K	V	T	F	Q	P	P	S	S	I	G	C	R	K	K	Y	I	D	G	E	K	Q	A	E	P	V	V	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	L	D	R	V	Y	G	G	L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	X	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L	T
Template Known Secondary structure								T																													T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	V	S	T	H	E	P	Q	T	K	D	Q	V	A	E	K	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	L	V	R	F	Q	N	K	C	S	D	I	V	F	A	R	K	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions