Job Description Q9UKW4 Confidence 100.00% Date Thu Apr 26 09:47:10 BST 2012 Rank 16 Aligned Residues 310 % Identity 19% Template c3odwB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:rho guanine nucleotide exchange factor 1; PDBTitle: crystal structure of the linker-dh/ph domains of p115-rhogef Resolution 3.20 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																							.	.																																							.	.	.
Query SS confidence																																							.	.																																							.	.	.
Query Sequence		P	E	N	D	I	R	S	C	C	L	A	E	I	K	Q	T	E	E	K	Y	T	E	T	L	E	S	I	E	K	Y	F	M	A	P	L	K	R	.	.	F	L	T	A	A	E	F	D	S	V	F	I	N	I	P	E	L	V	K	L	H	R	N	L	M	Q	E	I	H	D	S	I	V	N	K	N	D	Q	.	.	.
Query Conservation																																							.	.																																							.	.	.
Alig confidence																																							.	.																																							.	.	.
Template Conservation
Template Sequence		K	S	Q	V	K	R	Q	E	V	I	S	E	L	L	V	T	E	A	A	H	V	R	M	L	R	V	L	H	D	L	F	F	Q	P	M	A	E	C	L	F	F	P	L	E	E	L	Q	N	I	F	P	S	L	D	E	L	I	E	V	H	S	L	F	L	D	R	L	M	K	R	R	Q	E	S	I	E	E	I	G	D
Template Known Secondary structure																																T								T	S	S									S	T	T																					T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
				263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	L	Y	Q	V	F	I	N	Y	K	E	R	L	V	I	Y	G	Q	Y	C	S	G	V	E	S	A	I	S	S	L	D	Y	I	S	K	T	K	E	D	V	K	L	K	L	E	E	C	S	K	R	A	N	N	G	K	F	T	L	R	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		V	L	L	A	R	F	D	G	A	E	G	S	W	F	Q	K	I	S	S	R	F	C	S	R	Q	S	F	A	L	E	Q	L	K	A	K	Q	R	K	D	P	R	F	C	A	F	V	Q	E	A	E	S	R	P	R	C	R	R	L	Q	L	K	D	M	I	P	T	E	M	Q	R	L	T	K	Y	P	L	L	L	Q	S
Template Known Secondary structure								S																	T																											T	S	G	G	G	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.																									.
Query SS confidence																																																							.	.																									.
Query Sequence		L	V	K	H	T	T	D	P	T	E	K	A	N	L	K	L	A	L	D	A	M	K	D	L	A	Q	Y	V	N	E	V	K	R	D	N	E	T	L	R	E	I	K	Q	F	Q	L	S	I	E	N	L	N	Q	.	.	P	V	L	L	F	G	R	P	Q	G	D	G	E	I	R	I	T	T	L	D	K	H	T	K	.
Query Conservation																																																							.	.																									.
Alig confidence																																																							.	.																									.
Template Conservation
Template Sequence		I	G	Q	N	T	E	E	P	T	E	R	E	K	V	E	L	A	A	E	C	C	R	E	I	L	H	H	V	N	Q	A	V	R	D	M	E	D	L	L	R	L	K	D	Y	Q	R	R	L	D	L	S	H	L	R	Q	S	L	S	E	F	K	N	L	D	I	T	K	K	K	L	V	H	E	G	P	L	T	W	R	V
Template Known Secondary structure				T	T			S																																												T	T	T	T	T			T	T	S	S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		Q	E	R	H	I	F	L	F	D	L	A	V	I	V	C	K	R	K	G	D	N	.	.	.	Y	E	M	K	E	I	I	D	L	Q	Q	Y	K	I	A	N	N	P	T	T	D	K	E	N	K	K	W	S	Y	G	F	Y	L	I	H	T	Q	G	Q	N	G	L	E	F	Y	C	K	T	K	D	L	K	K	K	W	L
Query Conservation																							.	.	.
Alig confidence																							.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.
Template Sequence		T	K	V	H	V	L	L	L	D	D	L	L	L	L	L	Q	R	Q	D	E	R	L	L	L	K	S	L	R	P	V	L	R	L	T	S	A	M	T	R	E	V	A	T	D	H	K	.	.	.	.	.	.	.	.	A	F	Y	V	L	F	T	E	A	Q	I	Y	E	L	V	A	Q	T	V	S	E	R	K	N	W	C
Template Known Secondary structure										S	S									T	T									S				G	G	G							T	T		T	T	.	.	.	.	.	.	.	.																	S	S	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Template SS confidence
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.									.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
		495	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	F	E	M	A	L	S	N	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	I	T	E	T	A	G	S	L	K
Template Known Secondary structure											S
Template Predicted Secondary structure
Template SS confidence
		753	.	.	.	.	.	.	760	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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