Job Description Q9UKW4 Confidence 100.00% Date Thu Apr 26 09:47:10 BST 2012 Rank 6 Aligned Residues 319 % Identity 18% Template c1xdvB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:son of sevenless protein homolog 1; PDBTitle: experimentally phased structure of human the son of2 sevenless protein at 4.1 ang. Resolution 4.10 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.
Predicted Secondary structure																																		.	.	.																																						.	.	.	.
Query SS confidence																																		.	.	.																																						.	.	.	.
Query Sequence		R	S	C	C	L	A	E	I	K	Q	T	E	E	K	Y	T	E	T	L	E	S	I	E	K	Y	F	M	A	P	L	K	R	.	.	.	F	L	T	A	A	E	F	D	S	V	F	I	N	I	P	E	L	V	K	L	H	R	N	L	M	Q	E	I	H	D	S	I	V	N	K	N	D	.	.	.	.	Q	N	L	Y
Query Conservation																																		.	.	.																																						.	.	.	.
Alig confidence																																		.	.	.																																						.	.	.	.
Template Conservation
Template Sequence		Y	Y	D	L	V	K	A	F	M	A	E	I	R	Q	Y	I	R	E	L	N	L	I	I	K	V	F	R	E	P	F	V	S	N	S	K	L	F	S	A	N	D	V	E	N	I	F	S	R	I	V	D	I	H	E	L	S	V	K	L	L	G	H	I	E	D	T	V	E	M	T	D	E	G	S	P	H	P	L	V	G
Template Known Secondary structure																										T	T	T							T	T	T											T	T																					T			T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		266	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure											.	.																	.	.
Query SS confidence											.	.																	.	.
Query Sequence		Q	V	F	I	N	Y	K	E	R	.	.	L	V	I	Y	G	Q	Y	C	S	G	V	E	S	A	I	S	.	.	S	L	D	Y	I	S	K	T	K	E	D	V	K	L	K	L	E	E	C	S	K	R	A	N	N	G	K	F	T	L	R	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L
Query Conservation											.	.																	.	.
Alig confidence											.	.																	.	.
Template Conservation
Template Sequence		S	C	F	E	D	L	A	E	E	L	A	F	D	P	Y	E	S	Y	A	R	D	I	L	R	P	G	F	H	D	R	F	L	S	Q	L	S	K	P	G	A	A	L	Y	L	Q	S	I	G	E	G	F	K	E	A	V	Q	Y	V	L	P	R	L	L	L	A	P	V	Y	H	C	L	H	Y	F	E	L	L	K	Q	L
Template Known Secondary structure										T	T	T	T											T	S	T	T											S	T	T										T	T								T					T	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.									.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.																										.	.
Query SS confidence																													.	.	.	.	.	.	.	.																										.	.
Query Sequence		V	K	H	T	T	D	P	T	E	K	A	N	L	K	L	A	L	D	A	M	K	D	L	A	Q	Y	V	.	.	.	.	.	.	.	.	N	E	V	K	R	D	N	E	T	L	R	E	I	K	Q	F	Q	L	S	I	E	N	L	N	Q	.	.	P	V	L	L	F	G	R	P	Q	G	D	G	E	I	R	I	T	T
Query Conservation																													.	.	.	.	.	.	.	.																										.	.
Alig confidence																													.	.	.	.	.	.	.	.																										.	.																	.	.
Template Conservation																																																																																.	.
Template Sequence		E	E	K	S	E	D	Q	E	D	K	E	C	L	K	Q	A	I	T	A	L	L	N	V	Q	S	G	M	E	K	I	C	S	K	S	L	A	K	R	R	L	S	E	S	A	I	K	K	M	N	E	I	Q	K	N	I	D	G	W	E	G	K	D	I	G	Q	C	C	N	E	F	I	M	E	G	T	L	T	R	.	.
Template Known Secondary structure						S															T													S										T										T	T			S			S	S		G	G	G	T													.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	H	T	K	Q	E	R	H	I	F	L	F	D	L	A	V	I	V	C	K	R	K	G	D	N	Y	E	M	K	E	I	I	D	L	Q	Q	Y	K	I	A	N	N	P	T	T	D	K	E	N	K	K	W	S	Y	G	F	Y	L	I	H	T	Q	G	Q	N	G	L	E	F	Y	C	K	T	K	D	L	K	K
Query Conservation
Alig confidence		.	.																								.	.																	.	.	.	.																			.
Template Conservation		.	.																								.	.																	.	.	.	.																			.
Template Sequence		.	.	V	G	A	K	H	E	R	H	I	F	L	F	D	G	L	M	I	C	C	K	S	N	E	.	.	Y	R	L	K	E	K	F	F	M	R	K	V	Q	I	N	D	.	.	.	.	K	D	D	T	N	E	Y	K	H	A	F	E	I	I	L	K	D	E	.	N	S	V	I	F	S	A	K	S	A	E	E	K	N
Template Known Secondary structure		.	.	T	T		S	S								S	S										.	.									S		S						.	.	.	.				S	S	S			S							T	T	S	.								S	S
Template Predicted Secondary structure		.	.																								.	.																	.	.	.	.																			.
Template SS confidence
				453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.			.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.					.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W	L	E	Q	F	E	M	A	L	S	N	I	R	P	D	Y	A	D	S	N	F	H	D	F	K	M	H	T	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	W	M	A	A	L	I	S	L	Q	Y	R	S	T	L	R	L	P	S	A	D	V	Y	R	F	A	E	P	D	S	E
Template Known Secondary structure												T	T	T	T							S	T	T	S	S						T
Template Predicted Secondary structure
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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