Job Description Q9UKW4 Confidence 100.00% Date Thu Apr 26 09:47:10 BST 2012 Rank 9 Aligned Residues 315 % Identity 21% Template c1xcgA_ PDB info PDB header:signaling protein activator/signaling pr Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 11; PDBTitle: crystal structure of human rhoa in complex with dh/ph2 fragment of pdzrhogef Resolution 2.50 Å

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		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																											.	.																																					.
Query SS confidence																																											.	.																																					.
Query Sequence		Q	P	K	C	P	E	N	D	I	R	S	C	C	L	A	E	I	K	Q	T	E	E	K	Y	T	E	T	L	E	S	I	E	K	Y	F	M	A	P	L	K	R	.	.	F	L	T	A	A	E	F	D	S	V	F	I	N	I	P	E	L	V	K	L	H	R	N	L	M	Q	E	I	H	D	S	I	V	N	K	N	.
Query Conservation																																											.	.																																					.
Alig confidence																																											.	.																																					.
Template Conservation
Template Sequence		A	G	L	T	Q	R	E	I	D	R	Q	E	V	I	N	E	L	F	V	T	E	A	S	H	L	R	T	L	R	V	L	D	L	I	F	Y	Q	R	M	K	K	E	N	L	M	P	R	E	E	L	A	R	L	F	P	N	L	P	E	L	I	E	I	H	N	S	W	C	E	A	M	K	K	L	R	E	E	G	P	I
Template Known Secondary structure		G	G	S																																T							T	T	S	S									S	S	S																					T		S	S
Template Predicted Secondary structure
Template SS confidence
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		D	Q	N	L	Y	Q	V	F	I	N	Y	K	E	R	.	.	.	.	.	.	L	V	I	Y	G	Q	Y	C	S	G	V	E	S	A	I	S	S	L	D	Y	I	S	K	T	K	E	D	V	K	L	K	L	E	E	C	S	K	R	A	N	N	G	K	F	T	L	R	D	L	L	V	V	P	M	Q	R	V	L	K	Y
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	E	I	S	D	L	M	L	A	R	F	D	G	P	A	R	E	E	L	Q	Q	V	A	A	Q	F	C	S	Y	Q	S	I	A	L	E	L	I	K	T	K	Q	R	K	E	S	R	F	Q	L	F	M	Q	E	A	E	S	H	P	Q	C	R	R	L	Q	L	R	D	L	I	I	S	E	M	Q	R	L	T	K	Y
Template Known Secondary structure														S																T	T																											T	S	G	G	G	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		806	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.														.	.	.	.	.	.	.	.	400
Predicted Secondary structure														.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	L	L	L	Q	E	L	V	K	H	T	T	.	D	P	T	E	K	A	N	L	K	L	A	L	D	A	M	K	D	L	A	Q	Y	V	N	E	V	K	R	D	N	E	T	L	R	E	I	K	Q	F	Q	L	S	I	E	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	P	V	L	L	F	G	R
Query Conservation														.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	L	L	E	S	I	I	K	H	T	E	G	G	T	S	E	H	E	K	L	C	R	A	R	D	Q	C	R	E	I	L	K	Y	V	N	E	A	V	K	Q	T	E	N	R	H	R	L	E	G	Y	Q	K	R	L	D	A	T	A	L	E	R	A	S	N	P	L	A	A	E	F	K	S	L	D	L	T	T	R	K
Template Known Secondary structure											T	S		T	T	S																																															S		S		T	T	T	G	G	G	G	G			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		886	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		P	Q	G	D	G	E	I	R	I	T	T	L	D	K	H	T	K	Q	E	R	H	I	F	L	F	D	L	A	V	I	V	C	K	R	K	G	D	N	.	.	.	.	Y	E	M	K	E	I	I	D	L	Q	Q	Y	K	I	A	N	N	P	T	T	D	K	E	N	K	K	W	S	Y	G	F	Y	L	I	H	T	Q	G
Query Conservation																																								.	.	.	.
Alig confidence																		.																						.	.	.	.																	.	.	.	.
Template Conservation																		.																																										.	.	.	.
Template Sequence		M	I	H	E	G	P	L	T	W	R	I	S	K	D	K	T	.	L	D	L	H	V	L	L	L	E	D	L	L	V	L	L	Q	K	Q	D	E	K	L	L	L	K	C	T	F	S	P	V	L	K	L	N	A	V	L	I	R	S	.	.	.	.	V	A	T	D	K	R	A	F	F	I	I	C	T	S	K	L	G	P
Template Known Secondary structure													S	S	S			.									S	S									S	S										S				G	G	G						.	.	.	.		S	S		S	S									S	S	S	T
Template Predicted Secondary structure																		.																																										.	.	.	.
Template SS confidence
		966	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.		.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.					.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	G	L	E	F	Y	C	K	T	K	D	L	K	K	K	W	L	E	Q	F	E	M	A	L	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	I	Y	E	L	V	A	L	T	S	S	D	K	N	T	W	M	E	L	L	E	E	A	V	R	N
Template Known Secondary structure		T								S	S
Template Predicted Secondary structure
Template SS confidence
		1054	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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