Phyre 2 alignment of Q9UKW4 with c1ntyA

Job Description Q9UKW4
Confidence 100.00% Date Thu Apr 26 09:47:10 BST 2012

Rank 21 Aligned Residues 289

% Identity 17% Template c1ntyA_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:triple functional domain protein; PDBTitle: crystal structure of the first dh/ph domain of trio to 1.7 a

Resolution 1.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.
Query Sequence	D	I	R	S	C	C	L	A	E	I	K	Q	T	E	E	K	Y	T	E	T	L	E	S	I	E	K	Y	F	M	A	P	L	K	R	.	.	.	.	.	.	F	L	T	A	A	E	F	D	S	V	F	I	N	I	P	E	L	V	K	L	H	R	N	L	M	Q	E	I	H	D	S	I	V	N	K	N	D	Q	N	L
Query Conservation																																			.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.																																					.
Template Conservation																																																																													.
Template Sequence	R	R	K	E	F	I	M	A	E	L	I	Q	T	E	K	A	Y	V	R	D	L	R	E	C	M	D	T	Y	L	W	E	M	T	S	G	V	E	E	I	P	P	G	I	V	N	K	E	L	I	I	F	G	N	M	Q	E	I	Y	E	F	H	N	N	I	F	L	K	E	L	E	K	Y	E	Q	L	P	.	E	D	V
Template Known Secondary structure																																					S				T	T	T	T	T							T	T											T								T	T	T		G	.	G	G	T
Template Predicted Secondary structure																																																																													.
Template SS confidence
	1232	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.		.	.	1310

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	Q	V	F	I	N	Y	K	E	R	L	V	I	Y	G	Q	Y	C	S	G	V	E	S	A	I	S	S	L	D	Y	I	S	K	T	K	E	D	V	K	L	K	L	E	E	C	S	K	R	A	N	N	G	K	F	T	L	R	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L	V	K	H
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence	G	H	C	F	V	T	W	A	D	K	F	Q	M	Y	V	T	Y	C	K	N	K	P	D	S	T	Q	L	I	L	E	H	A	G	S	Y	F	D	E	I	Q	Q	R	H	.	.	.	.	.	.	.	G	L	A	N	S	I	S	S	Y	L	I	K	P	V	Q	R	I	T	K	Y	Q	L	L	L	K	E	L	L	T	C
Template Known Secondary structure							T	T	T	T	T																					T	T	T										.	.	.	.	.	.	.	T		S	S							T																			T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
	1311	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.								.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.

	345	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.
Predicted Secondary structure			.																																																																								.	.
Query SS confidence			.																																																																								.	.
Query Sequence	T	T	.	D	P	T	E	K	A	N	L	K	L	A	L	D	A	M	K	D	L	A	Q	Y	V	N	E	V	K	R	D	N	E	T	L	R	E	I	K	Q	F	Q	L	S	I	E	N	L	N	Q	P	V	L	L	F	G	R	P	Q	G	D	G	E	I	R	I	T	T	L	D	K	H	T	K	.	.	Q	E	R	H
Query Conservation			.																																																																								.	.
Alig confidence			.					.	.	.																								.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation								.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence	C	E	E	G	K	G	E	.	.	.	I	K	D	G	L	E	V	M	L	S	V	P	K	R	A	N	D	A	M	H	L	S	M	.	.	.	.	.	.	.	.	.	.	.	L	E	G	F	D	E	N	I	E	S	Q	G	E	L	I	L	Q	E	S	F	Q	V	W	D	P	K	T	L	I	R	K	G	R	E	R	H
Template Known Secondary structure	S		T	T		T	T	.	.	.																						T	T	.	.	.	.	.	.	.	.	.	.	.			S			S		S	G	G	G														S	S	S	S	S
Template Predicted Secondary structure								.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1384	.	.	.	.	.	1390				.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.												.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.

	422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.						.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.																																				.
Query SS confidence																	.	.	.	.	.																																				.
Query Sequence	I	F	L	F	D	L	A	V	I	V	C	K	R	K	G	D	.	.	.	.	.	N	Y	E	M	K	E	I	I	D	L	Q	Q	Y	K	I	A	N	N	P	T	T	D	K	E	N	K	K	W	S	Y	G	F	Y	L	I	.	H	T	Q	G	Q	N	G	L	E	F	Y	C	K	T	K	D	L	K	K	K	W	L	E
Query Conservation																	.	.	.	.	.																																				.
Alig confidence																	.	.	.	.	.																		.	.	.	.															.
Template Conservation																																							.	.	.	.
Template Sequence	L	F	L	F	E	M	S	L	V	F	S	K	E	V	K	D	S	S	G	R	S	K	Y	L	Y	K	S	K	L	F	T	S	E	L	G	V	T	E	.	.	.	.	H	V	E	G	D	P	C	K	F	A	L	W	V	G	R	T	P	T	S	D	N	K	I	V	L	K	A	S	S	I	E	N	K	Q	D	W	I	K
Template Known Secondary structure					S	S											T	T													G	G	G						.	.	.	.			T	T		T	T							S	S	S			T	T	T							S	S
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.					.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.

	496	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	F	E	M	A	L	S	N	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	H	I	R	E	V	I	Q	E	R	T
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
	1526	.	.	.	1530	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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