Job Description Q9UKW4 Confidence 100.00% Date Thu Apr 26 09:47:10 BST 2012 Rank 12 Aligned Residues 320 % Identity 24% Template c1foeA_ PDB info PDB header:signaling protein, immune system/signali Chain: A: PDB Molecule:t-lymphoma invasion and metastasis inducing PDBTitle: crystal structure of rac1 in complex with the guanine2 nucleotide exchange region of tiam1 Resolution 2.80 Å

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		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		K	C	P	E	N	D	I	R	S	C	C	L	A	E	I	K	Q	T	E	E	K	Y	T	E	T	L	E	S	I	E	K	Y	F	M	A	P	L	K	R	.	.	F	L	T	A	A	E	F	D	S	V	F	I	N	I	P	E	L	V	K	L	H	R	N	L	M	Q	E	I	H	D	S	I	V	N	K	N	D	Q	N
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		Q	L	S	D	A	D	K	L	R	K	V	I	C	E	L	L	E	T	E	R	T	Y	V	K	D	L	N	C	L	X	E	R	Y	L	K	P	L	Q	K	E	T	F	L	T	Q	D	E	L	D	V	L	F	G	N	L	T	E	X	V	E	F	Q	V	E	F	L	K	T	L	E	D	G	V	R	L	V	P	D	L	E
Template Known Secondary structure																																		T						T	S	S	S	S										S	S																				T	T	S	S		G	G
Template Predicted Secondary structure
Template SS confidence
		1034	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.
																264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	Q	V	F	I	N	Y	K	E	R	L	V	I	Y	G	Q	Y	C	S	G	V	E	S	A	I	S	S	L	D	Y	I	S	K	T	K	E	D	V	K	L	K	L	E	E	C	S	K	R	A	N	N	G	K	F	T	L	R	D	L	L	V	V	P	M	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.																			.
Template Conservation																																																.																			.
Template Sequence		K	L	E	K	V	D	Q	F	K	K	V	L	F	S	L	G	G	S	F	L	Y	Y	A	D	R	F	K	L	Y	S	A	F	C	A	S	H	T	K	V	P	K	V	L	V	K	A	.	K	T	D	T	A	F	K	A	F	L	D	A	Q	N	P	R	Q	Q	.	H	S	S	T	L	E	S	Y	L	I	K	P	I	Q
Template Known Secondary structure		G			S	G	G	G	G															T	T	G	G	G	G								T	T	T						T	T	T	.	T	T													T	T			.	G	G	G	S					T	T
Template Predicted Secondary structure																																																.																			.
Template SS confidence
		1114	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.		1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.		.	.	1180	.	.	.	.	.	.	.	.	.	1190	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.				.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																			.																																																.	.	.
Query SS confidence																			.																																																.	.	.
Query Sequence		R	V	L	K	Y	H	L	L	L	Q	E	L	V	K	H	T	T	.	D	P	T	E	K	A	N	L	K	L	A	L	D	A	M	K	D	L	A	Q	Y	V	N	E	V	K	R	D	N	E	T	L	R	E	I	K	Q	F	Q	L	S	I	E	N	L	N	Q	.	.	.	P	V	L	L	F	G	R	P	Q	G	D	G
Query Conservation																			.																																																.	.	.
Alig confidence																			.																																																.	.	.
Template Conservation
Template Sequence		R	V	L	K	Y	P	L	L	L	R	E	L	F	A	L	T	D	A	E	S	E	E	H	Y	H	L	D	V	A	I	K	T	X	N	K	V	A	S	H	I	N	E	X	Q	K	I	H	E	E	F	G	A	V	F	D	Q	L	I	A	E	Q	T	G	E	K	K	E	V	A	D	L	S	X	G	D	L	L	L	H	T
Template Known Secondary structure				T	T											T	S		T	T	S																																							T	T		S	S		S		S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		1192	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.
		406	.	.	.	410	.	.						.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.																				.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	R	I	T	T	L	.	.	.	.	.	D	K	H	T	K	Q	E	R	H	I	F	L	F	D	L	A	V	I	V	C	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	G	D	N	Y	E	M	K	E	I	I	D	L	Q	Q	Y	K	I	A	N	N	P	T	T	D	K	E
Query Conservation									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	I	W	L	N	P	P	A	S	L	G	K	W	K	K	E	P	E	L	A	A	F	V	F	K	T	A	V	V	L	V	Y	K	D	G	S	K	Q	K	K	K	L	V	G	S	H	R	L	S	I	Y	E	E	W	D	P	F	R	F	R	H	X	I	P	T	E	A	L	Q	V	R	A	L	P	S	A	D	A	E
Template Known Secondary structure						S	S							T	T		S	S									T	T												S			S	S				T	T	T	T		S	S		S		S									G	G	G									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1272	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.
		462	.	.	.	.	.	.	.	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		N	K	K	W	S	Y	G	F	Y	L	I	H	T	.	.	.	Q	G	Q	N	G	L	E	F	Y	C	K	T	K	D	L	K	K	K	W	L	E	Q	F	E	M	A	L	S	N	I	R	P	D
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		A	N	A	V	C	E	I	V	H	V	K	S	E	S	E	G	R	P	E	R	V	F	H	L	C	C	S	S	P	E	S	R	K	D	F	L	K	S	V	H	S	I	L	R	D	K	H	R	R
Template Known Secondary structure		S											B	T	G	G	G	B										S	S
Template Predicted Secondary structure
Template SS confidence
		1352	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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