Job Description A0PJY2 Confidence 77.38% Date Fri May 25 09:29:34 BST 2012 Rank 222 Aligned Residues 91 % Identity 13% Template c3k1qC_ PDB info PDB header:virus Chain: C: PDB Molecule:vp3b, the building block protein of inner shell; PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics Resolution 4.50 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	A	E	R	N	K	L	V	V	P	A	V	E	K	Y	P	S	G	V	A	F	K	D	L	S	Q	A	Q	L	Q	H	Y	M	K	E	S	A	Q	L	L	S	E	K	I	A	F	K	T	S	D	F	S	R	G	S	P	N	A	K	P	K	V	F	T	C	E	V	C	G	K	V	F	N	A	H	Y	N	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	S	Q	S	G	P	N	A	V	G	D	S	A	P	S	S	S	V	N	N	D	G	D	I	I	T	R	P	T	S	D	S	I	A	A	V	A	N	A	T	K	P	A	A	V	V	S	D	P	Q	S	M	K	V	T	P	I	V	N	P	S	S	Y	V	C	N	V	C	N	A	R	F	S	T	M	S	A	L	S
Template Known Secondary structure				T	T		S	S			T	T						T	T	B		T	T	S		B		S	S											G	G	G				T	T				S							S		S	S	S		T	T	T	T		S	S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		277	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	M	P	V	H	T	G	A	R	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	L	R	S	D	H	R	D	D	A
Template Known Secondary structure							T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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