Job Description A0PJY2 Confidence 98.39% Date Fri May 25 09:29:34 BST 2012 Rank 116 Aligned Residues 141 % Identity 14% Template c3hcsA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: crystal structure of the n-terminal domain of traf6 Resolution 2.20 Å

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		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	V	F	T	C	E	V	C	G	K	V	F	N	A	H	Y	N	L	T	R	H	M	P	V	H	T	G	A	R	P	F	V	C	K	V	C	G	K	G	F	R	Q	A	S	T	L	C	R	H	K	I	I	H	T	Q	E	K	P	H	K	C	N	Q	C	G	K	A	F	N	R	S	S	T	L	N	T	H	T	R
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.													.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.													.	.	.	.	.
Template Sequence		E	S	K	Y	E	C	P	I	C	L	M	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	A	V	Q	T	P	.	C	G	H	R	F	C	K	A	C	I	I	K	.	.	.	.	.	S	I	R	D	A	G	H	K	C	P	V	D	N	E	I	L	L	E	N	Q	L	F	P	D	N	F	A
Template Known Secondary structure			G	G	G	B		T	T	T		S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					T	.	T	S											.	.	.	.	.							S	B		T	T	T			B			G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.													.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.																.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	A	G	Y	K	P	F	V	C	E	F	C	G	K	G	F	H	Q	K	G	N	Y	K	N	H	K	L	T	H	S	G	E	K	Q	F	K	C	N	I	C	N	K	A	F	H	Q	V	Y	N	L	T	F	H	M	H	T	H	N	D	K	K	P	F	T	C	P	T	C	G	K	G	F	C	R	N	F	D	L	K
Query Conservation
Alig confidence																																																																												.
Template Conservation																																																																												.
Template Sequence		K	R	E	I	L	S	L	M	V	K	C	P	N	E	G	C	L	H	K	M	E	L	R	H	L	E	D	H	Q	A	H	C	E	F	A	L	M	D	C	P	Q	C	Q	R	P	F	Q	K	F	H	I	N	I	H	I	L	K	D	C	P	R	R	Q	V	S	C	D	N	C	A	A	S	M	A	.	F	E	D	K	E
Template Known Secondary structure							T	S						S	T	T							G	G	G						T	T		T	T	S					T	T	T						G	G	G								T		T	T						T	T	T						.	G	G	G
Template Predicted Secondary structure																																																																												.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.
		417	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	H	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		203	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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