Job Description A0PJY2 Confidence 99.89% Date Fri May 25 09:29:34 BST 2012 Rank 3 Aligned Residues 146 % Identity 25% Template c2rpcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:zinc finger protein zic 3; PDBTitle: solution structure of the tandem zf-c2h2 domains from the2 human zinc finger protein zic 3 Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		S	E	K	I	A	F	K	T	S	D	F	S	R	G	S	P	N	A	K	P	K	V	F	T	C	E	V	C	G	K	V	F	N	A	H	Y	N	L	T	R	H	M	P	V	.	H	T	G	A	R	P	F	V	C	K	V	C	G	K	G	F	R	Q	A	S	T	L	C	R	H	K	I	I	H	T	Q	E	K	P	H
Query Conservation																																														.
Alig confidence																																														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	S	G	Q	P	I	K	Q	E	L	S	C	K	W	I	D	E	A	Q	L	S	R	P	K	K	S	C	D	R	T	F	S	T	M	H	E	L	V	T	H	V	T	M	E	H	V	G	G	P	E	Q	N	N	H	V	C	Y	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Template Known Secondary structure					S							B				B			T	T			S	S	S								B	S	S										T	T	T	S			T	T		S	S					B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.																					.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																									.	.																														.	.
Query SS confidence																									.	.																														.	.
Query Sequence		K	C	N	Q	C	G	K	A	F	N	R	S	S	T	L	N	T	H	T	R	I	H	A	.	.	G	Y	K	P	F	V	C	E	F	C	G	K	G	F	H	Q	K	G	N	Y	K	N	H	K	L	T	H	S	G	.	.	E	K	Q	F	K	C	N	I	C	N	K	A	F	H	Q	V	Y	N	L	T	F	H	M	H
Query Conservation																									.	.																														.	.
Alig confidence																									.	.																														.	.
Template Conservation
Template Sequence		E	C	P	R	E	G	K	S	F	K	A	K	Y	K	L	V	N	H	I	R	V	H	T	G	E	K	P	F	P	C	P	F	P	G	C	G	K	I	F	A	R	S	E	N	L	K	I	H	K	R	T	H	T	G	E	K	P	F	K	C	E	F	E	G	C	D	R	R	F	A	N	S	S	D	R	K	K	H	M	H
Template Known Secondary structure		T		T	T	S	S				S	S								T								S				S		T	T	T					S										T	T	T		S	S		S	B			S	S	T	T					B	S	S							S	S	T
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		393	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	N	D	K	K	P	F	T	C	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	T	S	D	K	S	G	P	S	S
Template Known Secondary structure		T	T	T	S				S		S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions