Job Description A0PJY2 Confidence 96.89% Date Fri May 25 09:29:34 BST 2012 Rank 142 Aligned Residues 142 % Identity 15% Template c2rgtA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:fusion of lim/homeobox protein lhx3, linker, insulin gene PDBTitle: crystal structure of lhx3 lim domains 1 and 2 with the binding domain2 of isl1 Resolution 2.05 Å

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		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		V	C	K	V	C	G	K	G	F	R	Q	A	S	T	L	C	R	H	K	I	I	H	T	Q	E	K	P	H	K	C	N	Q	C	G	K	A	F	N	R	.	.	.	.	S	S	T	L	N	T	H	T	R	I	H	A	G	Y	K	P	F	V	C	E	F	C	G	K	G	F	H	Q	K	G	N	Y	K	N	H	K	L
Query Conservation																																									.	.	.	.
Alig confidence																									.																.	.	.	.
Template Conservation																									.
Template Sequence		M	C	A	G	C	D	Q	H	I	L	D	R	F	I	L	K	A	L	D	R	H	W	H	.	S	K	C	L	K	C	S	D	C	H	V	P	L	A	E	R	C	F	S	R	G	E	S	V	Y	C	K	D	D	F	F	K	R	F	G	T	K	C	A	A	C	Q	L	G	I	P	P	T	Q	V	V	R	R	A	Q	D
Template Known Secondary structure		B	B	S	S	S	S	S	B			S	S	S					S	S					.	T	T	T	S	B		T	T	T			B			S					S	S	S													S		B		T	T	T			B			T	T	S						T	T
Template Predicted Secondary structure																									.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	S	G	E	K	Q	F	K	C	N	I	C	N	K	A	F	H	Q	V	Y	N	L	T	F	H	M	H	T	H	N	D	K	K	P	F	T	C	P	T	C	G	K	G	F	C	R	N	F	D	L	K	K	H	V	R	K	L	H	D	S	S	L	G	L	A	R	T	P	A	G	E	P	G	T	E	P	P	P	P
Query Conservation
Alig confidence																							.	.	.	.												.					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.												.					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	Y	H	L	H	C	F	A	C	V	V	C	K	R	Q	L	A	T	G	D	.	.	.	.	E	F	Y	L	M	E	D	S	R	L	V	.	C	K	A	D	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	T	A	K	Q	G	G	T	P	M	V	A	A	S	P	E	R	H	D	G	G	L	Q	A	N	P
Template Known Secondary structure						G	G	G		B		T	T	T			B			T	T		.	.	.	.						T	T	S				.					.	.	.	.	.	.	.	.	.	.	.	.																					S	S
Template Predicted Secondary structure																							.	.	.	.												.					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.		.	.	.	.													.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		445	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	V	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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