Job Description A0PJY2 Confidence 80.68% Date Fri May 25 09:29:34 BST 2012 Rank 215 Aligned Residues 158 % Identity 15% Template c2jtnA_ PDB info PDB header:protein binding/transcription Chain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex Resolution UNK

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	N	K	L	V	V	P	A	V	E	K	Y	P	S	G	V	A	F	K	D	L	S	Q	A	Q	L	Q	H	Y	M	K	E	S	A	Q	L	L	S	E	K	I	A	F	K	T	S	D	F	S	R	G	S	P	N	A	K	P	K	V	F	T	C	E	V	C	G	K	V	F	N	A	H	Y	N	L	T	R	H	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	Q	V	P	D	V	M	V	V	G	E	P	T	L	M	G	G	E	F	G	D	E	D	E	R	L	I	T	R	L	E	N	T	Q	F	D	A	A	N	G	I	D	D	E	G	G	S	G	G	H	M	G	S	G	G	T	P	E	I	P	M	C	A	G	C	D	Q	H	I	L	D	R	F	I	L	K	A	L	D
Template Known Secondary structure							S																T	T	T	S									S		T	T	S	S	S		S	S	S	S		S	S	S	S	S								S			B		B	T	S	S	S	B				S						T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	H	T	G	A	R	P	F	V	C	K	V	C	G	K	G	F	R	Q	A	S	T	L	C	R	H	K	I	I	H	T	Q	E	K	P	H	K	C	N	Q	C	G	K	A	F	N	R	S	S	T	L	N	T	H	T	R	I	H	A	G	Y	K	P	F	V	C	E	F	C	G	K	G	F	H	Q	K	G	N	Y
Query Conservation
Alig confidence							.																.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	H	W	H	S	.	K	C	L	K	C	S	D	C	H	V	P	L	A	E	R	.	.	.	.	.	.	.	C	F	S	R	G	E	S	V	Y	C	K	D	D	F	F	K	R	F	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	C	A	A	C	Q	L	G	I	P	P	T	Q	V	V
Template Known Secondary structure						S	.	S	T	T	S		T	T	T					S	S		.	.	.	.	.	.	.					T	T											T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T						S	S
Template Predicted Secondary structure							.																.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100								.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	H	K	L	T	H	S	G	E	K	Q	F	K	C	N	I	C	N	K	A	F	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	A	Q	D	F	V	Y	H	L	H	C	F	A	C	V	V	C	K	R	Q	L	A
Template Known Secondary structure					T	T					T	T	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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