Job Description A0PJY2 Confidence 99.41% Date Fri May 25 09:29:34 BST 2012 Rank 42 Aligned Residues 111 % Identity 31% Template c1ubdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:protein (yy1 zinc finger domain); PDBTitle: co-crystal structure of human yy1 zinc finger domain bound2 to the adeno-associated virus p5 initiator element Resolution 2.50 Å

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		260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		F	T	C	.	.	E	V	C	G	K	V	F	N	A	H	Y	N	L	T	R	H	M	P	V	H	T	G	A	R	P	F	V	C	K	V	C	G	K	G	F	R	Q	A	S	T	L	C	R	H	K	I	I	H	T	Q	E	K	P	H	K	C	N	Q	C	G	K	A	F	N	R	S	S	T	L	N	T	H	T	R	I
Query Conservation					.	.
Alig confidence					.	.																								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	C	P	H	K	G	C	T	K	M	F	R	D	N	S	A	M	R	K	H	L	H	T	H	G	P	R	.	V	H	V	C	A	E	C	G	K	A	F	V	E	S	S	K	L	K	R	H	Q	L	V	H	T	G	E	K	P	F	Q	C	T	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	T	T						S	S									G	G	G	S			.					T	T	T					S	S								G	G	G	T	S									S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	Y	K	P	F	V	C	E	F	C	G	K	G	F	H	Q	K	G	N	Y	K	N	H	K	L	T	H	S	G	E	K	Q	F	K	C	N	I	C	N	K	A	F	H	Q	V	Y	N	L	T	F	H	M	H	T	H	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	C	G	K	R	F	S	L	D	F	N	L	R	T	H	V	R	I	H	T	G	D	R	P	Y	V	C	P	F	D	G	C	N	K	K	F	A	Q	S	T	N	L	K	S	H	I	L	T	H	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	T						S																						S	T	T						S	S	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions