Job Description A0PJY2 Confidence 99.94% Date Fri May 25 09:29:34 BST 2012 Rank 1 Aligned Residues 169 % Identity 20% Template c1tf6D_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:protein (transcription factor iiia); PDBTitle: co-crystal structure of xenopus tfiiia zinc finger domain2 bound to the 5s ribosomal rna gene internal control region Resolution 3.10 Å

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		255	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		A	K	P	K	V	F	T	C	E	V	.	.	C	G	K	V	F	N	A	H	Y	N	L	T	R	H	M	P	V	H	T	G	A	R	P	F	V	C	K	V	C	G	K	G	F	R	Q	A	S	T	L	C	R	H	K	I	I	H	T	Q	E	K	P	H	K	C	N	Q	C	G	K	A	F	N	R	S	S	T	L	N
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		V	V	Y	K	R	Y	I	C	S	F	A	D	C	G	A	A	Y	N	K	N	W	K	L	Q	A	H	L	C	K	H	T	G	E	K	P	F	P	C	K	E	E	G	C	E	K	G	F	T	S	L	H	H	L	T	R	H	S	L	T	H	T	G	E	K	N	F	T	C	D	S	D	G	C	D	L	R	F	T	T	K
Template Known Secondary structure			S	S	S			B		S	S	T	T	T			B		S	S													T			S	S			S	S	T	T						S	S	T	T	T	T					T	T	T	T	T								S	S	S						S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		333	.	.	.	.	.											.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.
Query Sequence		T	H	T	R	I	H	.	.	.	.	.	.	.	.	.	.	A	G	Y	K	P	F	V	C	E	F	C	G	K	G	F	H	Q	K	G	N	Y	K	N	H	K	L	T	H	S	G	E	K	Q	F	K	C	N	I	C	N	K	A	F	H	Q	V	Y	N	L	T	F	H	M	H	T	H	N	D	K	K	P	F	T	C
Query Conservation								.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	M	K	K	H	F	N	R	F	H	N	I	K	I	C	V	Y	V	C	H	F	E	N	C	G	K	A	F	K	K	H	N	Q	L	K	V	H	Q	F	S	H	T	Q	Q	L	P	Y	E	C	P	H	E	G	C	D	K	R	F	S	L	P	S	R	L	K	R	H	E	K	V	H	A	G	Y	P	C	K	K	D
Template Known Secondary structure										T	T	S	S	T	T	T			B			T	T	S	S	S				B	S	S										T	T	S	S	S		S	S	B			S	S	S				B		S	S									T	S	S		S					S	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	C	G	K	G	F	C	R	N	F	D	L	K	K	H	V	R	K	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	C	S	F	V	G	K	T	W	T	L	Y	L	K	H	V	A	E	C	H
Template Known Secondary structure		T	T						S										T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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