Job Description O75791 Confidence 99.80% Date Wed May 9 17:39:07 BST 2012 Rank 16 Aligned Residues 142 % Identity 32% Template c2dybA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: the crystal structure of human p40(phox) Resolution 3.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		E	A	V	A	K	F	D	F	T	A	S	G	E	D	E	L	S	F	H	T	G	D	V	L	K	I	L	S	N	Q	E	.	E	W	F	K	A	E	L	G	S	Q	E	G	Y	V	P	K	N	F	I	D	I	Q	F	P	K	W	F	H	E	G	L	S	R	H	Q	A	E	N	L	L	M	G	K	E	V	G	F	F
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		R	A	E	A	L	F	D	F	T	G	N	S	K	L	E	L	N	F	K	A	G	D	V	I	F	L	L	S	R	I	N	K	D	W	L	E	G	T	V	R	G	A	T	G	I	F	P	L	S	F	V	K	I	L	K	D	F	P	E	E	D	D	P	T	N	W	L	R	C	Y	Y	Y	E	D	T	I	S	T	I	K
Template Known Secondary structure						S	S		B			S	S	S	S	B			B		T	T										S	S	S							T	T							G	G	G										T	T													S	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	R	A	S	Q	S	S	P	G	D	F	S	I	S	V	R	H	E	D	D	V	Q	H	F	K	V	M	R	D	N	K	G	N	Y	F	L	W	T	E	K	F	P	S	L	N	K	L	V	D	Y	Y	R	T	N	S	I	S	R	Q	K	Q	I	F	L	R	D	R	T	R	E	D	Q	G	H	R	G	N	S	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	A	V	E	E	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	R	S	Q	G	G	P	H	L	S	G	A	V	G	E	E	I	R	P	S	M	N	R	K	L	S	D	H	P	P	T	L	P	L	Q	Q	H	Q	H	Q	P	Q	P	P	Q	Y	A	P	A	P	Q	Q	L	Q	Q	P	P	Q	Q	R	Y	L	Q	H	H	H	F	H	Q	E	R	R	G	G	S	L	D	I	N
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.
Predicted Secondary structure																																																							.	.																				.	.	.
Query SS confidence																																																							.	.																				.	.	.
Query Sequence		D	G	H	C	G	T	G	L	G	S	E	M	N	A	A	L	M	H	R	R	H	T	D	P	V	Q	L	Q	A	A	G	R	V	R	W	A	R	A	L	Y	D	F	E	A	L	E	D	D	E	L	G	F	H	.	.	S	G	E	V	V	E	V	L	D	S	S	N	P	S	W	W	T	G	R	.	.	.	L	H	N
Query Conservation																																																							.	.																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.																				.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	T	P	L	L	K	D	L	L	E	L	T	R	R	E	F	Q	R	E	D	I	A	L	N	Y	R	D	A	E	G	D	L	V	R	L	L	S	D	E	D	V	A	L	M	V	R	Q	A	R	G	L	P	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																	T		S									S	S	S							S												T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																												262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		316	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	G	L	F	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	R	L	F	P
Template Known Secondary structure		B	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions