Job Description A0PK00 Confidence 41.17% Date Fri May 25 09:38:31 BST 2012 Rank 129 Aligned Residues 95 % Identity 12% Template c3tnfB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:lida; PDBTitle: lida from legionella in complex with active rab8a Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	G	Q	L	E	R	C	E	R	E	W	H	E	L	E	G	E	F	Q	E	L	Q	E	T	H	R	I	Y	K	Q	K	L	E	E	L	A	A	L	Q	T	L	C	S	S	S	I	S	K	Q	K	K	H	L	K	D	L	K	L	T	L	Q	R	C	K	R	H	A	S	R	E	E	A	E	L	V	Q	Q	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	K	K	L	D	K	L	E	R	Q	G	K	D	L	E	D	K	Y	K	T	Y	E	E	N	L	E	G	F	E	K	L	L	T	D	S	E	E	L	S	L	S	E	I	N	E	K	M	E	A	F	S	K	D	S	E	K	L	T	Q	L	M	E	K	H	K	G	D	E	K	T	V	Q	S	L	Q	R	E	H	H
Template Known Secondary structure						T	T																						T	S					T	T																												T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	I	K	E	R	Q	D	V	F	F	D	M	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	K	A	K	L	A	N	L	Q	V	L	H	D	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions