Job Description A0PK00 Confidence 28.92% Date Fri May 25 09:38:31 BST 2012 Rank 175 Aligned Residues 93 % Identity 11% Template c3pltB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:sphingolipid long chain base-responsive protein lsp1; PDBTitle: crystal structure of lsp1 from saccharomyces cerevisiae Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	E	R	C	E	R	E	W	H	E	L	E	G	E	F	Q	E	L	Q	E	T	H	R	I	Y	K	Q	K	L	E	E	L	A	A	L	Q	T	L	C	S	S	S	I	S	K	Q	K	K	H	L	K	D	L	K	L	T	L	Q	R	C	K	R	H	A	S	R	E	E	A	E	L	V	Q	Q	M	A	A	N
Query Conservation
Alig confidence																																																																			.	.
Template Conservation																																																																			.	.
Template Sequence		D	D	V	S	D	V	T	D	K	L	G	V	L	I	Y	E	L	G	E	L	Q	D	Q	F	I	D	K	Y	D	Q	Y	R	V	T	L	K	S	I	R	N	I	E	A	S	V	Q	P	S	R	D	R	K	E	K	I	T	D	E	I	A	H	L	K	Y	K	.	.	D	P	Q	S	T	K	I	P	V	L	E	Q	E
Template Known Secondary structure																																																																T	T	S	.	.				T	T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	E	R	Q	D	V	F	F	D	M	E	A	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	R	A	E	A	E	S	L	V	A	E	A	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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