Job Description A0PK00 Confidence 38.86% Date Fri May 25 09:38:31 BST 2012 Rank 135 Aligned Residues 66 % Identity 15% Template c2ykqC_ PDB info PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer Resolution 3.10 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.								.
Query SS confidence																																																.	.	.	.	.	.								.
Query Sequence		Q	E	L	Q	E	T	H	R	I	Y	K	Q	K	L	E	E	L	A	A	L	Q	T	L	C	S	S	S	I	S	K	Q	K	K	H	L	K	D	L	K	L	T	L	Q	R	C	K	.	.	.	.	.	.	R	H	A	S	R	E	E	.	A	E	L	V	Q	Q	M	A	A	N	I	K	E
Query Conservation																																																.	.	.	.	.	.								.
Alig confidence																																																.	.	.	.	.	.								.
Template Conservation
Template Sequence		D	Q	L	E	E	R	V	S	A	A	E	D	E	I	N	E	I	K	R	E	G	K	F	R	E	K	R	I	K	R	N	E	Q	S	L	Q	E	I	W	D	Y	V	K	R	P	N	L	R	L	I	G	V	P	E	S	D	V	E	N	G	T	K	L	E	N	T	L	Q	D	I	I	Q	E
Template Known Secondary structure		T	T																																									T	T	T						S					S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions