Job Description A0PK00 Confidence 29.12% Date Fri May 25 09:38:31 BST 2012 Rank 174 Aligned Residues 83 % Identity 14% Template c2v4hA_ PDB info PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex Resolution 2.9 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		Q	L	E	R	C	E	R	E	W	H	E	L	E	G	E	F	Q	E	L	Q	E	T	H	R	I	Y	K	Q	K	L	E	E	L	A	A	L	Q	T	L	.	.	.	C	S	S	S	I	S	K	Q	K	K	H	L	K	D	L	K	L	T	L	Q	R	C	K	R	H	A	S	R	E	E	A	E	L	V	Q	Q	M	A
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.
Template Sequence		Q	L	E	D	L	R	Q	Q	L	Q	Q	A	E	E	A	L	V	A	K	Q	E	L	I	D	K	L	K	E	E	A	E	Q	H	K	I	V	M	E	T	V	P	V	L	K	A	Q	A	D	I	Y	K	A	D	F	Q	A	E	R	H	A	R	E	K	L	V	.	.	.	.	.	.	.	.	E	K	K	E	Y	L	Q
Template Known Secondary structure																																							T																												.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.									.	.	.	320	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	I	K	E	R	Q	D	V	F	F	D	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	L	E	Q	L	Q	R	E	F	N	K	L	K
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions