Job Description A0PK00 Confidence 88.55% Date Fri May 25 09:38:31 BST 2012 Rank 49 Aligned Residues 92 % Identity 11% Template c2eqbC_ PDB info PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	E	R	C	E	R	E	W	H	E	L	E	G	E	F	Q	E	L	Q	E	T	H	R	I	Y	K	Q	K	L	E	E	L	A	A	L	Q	T	L	C	S	S	S	I	S	K	Q	K	K	H	L	K	D	L	K	L	T	L	Q	R	C	K	R	H	A	S	R	E	E	A	E	L	V	Q	Q	M	A	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	Y	N	Q	L	K	E	D	Y	N	T	L	K	R	E	L	S	D	R	D	D	E	V	K	R	L	R	E	D	I	A	K	E	N	E	L	R	T	K	A	E	E	E	A	D	K	L	N	K	E	V	E	D	L	T	A	S	L	F	D	E	A	N	N	M	V	A	D	A	R	K	E	K	Y	A	I	E	I	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	E	R	Q	D	V	F	F	D	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	R	L	T	E	Q	L	R	E	K	D
Template Known Secondary structure									T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions