Job Description A0PK00 Confidence 22.52% Date Fri May 25 09:38:31 BST 2012 Rank 217 Aligned Residues 84 % Identity 11% Template c1wpaA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522 Resolution 1.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	E	W	H	E	L	E	G	E	F	Q	E	L	Q	E	T	H	R	I	Y	K	Q	K	L	E	E	L	A	A	L	Q	T	L	C	S	S	S	I	S	K	Q	K	K	H	L	K	D	L	K	L	T	L	Q	R	C	K	R	H	A	S	R	E	E	A	E	L	V	Q	Q	M	A	A	N	I	K	E	R	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	N	F	D	T	G	L	Q	E	Y	K	S	L	Q	S	E	L	D	E	I	N	K	E	L	S	R	L	D	K	E	L	D	D	Y	R	E	E	S	E	E	Y	M	A	A	A	D	E	Y	N	R	L	K	Q	V	K	G	S	A	D	Y	K	S	K	K	N	H	C	K	Q	L	K	S	K	L	S	H	I	K	K
Template Known Secondary structure																																				S		T	T	S																		T	S
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
		89	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	G	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		513	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions