Job Description A0PK00 Confidence 34.02% Date Fri May 25 09:38:31 BST 2012 Rank 149 Aligned Residues 97 % Identity 9% Template c1av1B_ PDB info PDB header:lipid transport Chain: B: PDB Molecule:apolipoprotein a-i; PDBTitle: crystal structure of human apolipoprotein a-i Resolution 4.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.																							.
Query SS confidence																																		.	.	.	.	.																							.
Query Sequence		M	S	G	Q	L	E	R	C	E	R	E	W	H	E	L	E	G	E	F	Q	E	L	Q	E	T	H	R	I	Y	K	Q	K	.	.	.	.	.	L	E	E	L	A	A	L	Q	T	L	C	S	S	S	I	S	K	Q	K	K	H	L	.	K	D	L	K	L	T	L	Q	R	C	K	R	H	A	S	R	E	E	A	E
Query Conservation																																		.	.	.	.	.																							.
Alig confidence																																		.	.	.	.	.																							.
Template Conservation
Template Sequence		L	L	D	N	W	D	S	V	T	S	T	F	S	K	L	R	E	Q	L	G	P	V	T	Q	E	F	W	D	N	L	E	K	E	T	E	G	L	R	Q	E	M	S	K	D	L	E	E	V	K	A	K	V	Q	P	Y	L	D	D	F	Q	K	K	W	Q	E	E	M	E	L	Y	R	Q	K	V	E	P	L	R	A	E
Template Known Secondary structure		G	G	G							T	T								T	T																																																					T	T
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Q	Q	M	A	A	N	I	K	E	R	Q	D	V	F	F	D	M	E	A	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	E	G	A	R	Q	K	L	H	E	L	Q	E	K	L	S	P	L	G	E	E	M
Template Known Secondary structure																		T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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